Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.114054	2510016D11Rik	RIKEN cDNA 2510016D11 gene	5		70289
Mm.114054	Tpcn1	two pore channel 1	5		252972
Gene Ontology	integral to membrane | ion channel activity | ion transport | transport
Human Homolog	TPCN1[two pore segment channel 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 50 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAACCCTTCT (5) 8.2 0.0082 P8 Cb GC GTGGCTCACG (9) 6.5 0.0065 P8 Cb GC GGTGCCCTAG (2) 1.6 0.0016 P8 Cb GC TCCATCCTCT (7) 1.6 0.0016 Cb medulloblastoma GAACCCTTCT (5) 20.8 0.0208 Cb medulloblastoma GTGGCTCACG (9) 11.6 0.0116 Cb medulloblastoma TCCATCCTCT (7) 2.3 0.0023 P8 GC+1d culture GTGGCTCACG (9) 16 0.016 P8 GC+1d culture TAGAGGTACT (2) 4.6 0.0046 P8 GC+1d culture TTTATTATTT (15) 2.3 0.0023 P8 GC+1d culture TCCATCCTCT (7) 1.1 0.0011 P8 GC+SHH+1d culture GTGGCTCACG (9) 11.7 0.0117 P8 GC+SHH+1d culture TCCATCCTCT (7) 3.5 0.0035 P8 GC+SHH+1d culture TAGAGGTACT (2) 2.3 0.0023 P8 GC+SHH+1d culture GAACCCTTCT (5) 1.2 0.0012 P8 GC+SHH+1d culture GGTGCCCTAG (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTATTATTT (15) 1.2 0.0012 3T3 fibroblasts GTGGCTCACG (9) 17.5 0.0175 3T3 fibroblasts GAACCCTTCT (5) 3.5 0.0035 E15 cortex GTGGCTCACG (9) 24.7 0.0247 E15 cortex TCCATCCTCT (7) 4.9 0.0049 P1 cortex GGTGCCCTAG (2) 9.1 0.0091 P1 cortex TTTATTATTT (15) 9.1 0.0091 Hypothalamus GTGGCTCACG (9) 7.2 0.0072 Hypothalamus TTTATTATTT (15) 7.2 0.0072 E12.5 retina GTGGCTCACG (9) 7.5 0.0075 E14.5 retina GTGGCTCACG (9) 9.1 0.0091 E14.5 retina TTTATTATTT (15) 3.6 0.0036 E16.5 retina GTGGCTCACG (9) 14.5 0.0145 E16.5 retina TTTATTATTT (15) 1.8 0.0018 E18.5 retina GTGGCTCACG (9) 16.4 0.0164 E18.5 retina TAGAGGTACT (2) 1.8 0.0018 E18.5 retina TTTATTATTT (15) 1.8 0.0018 P0.5 retina GTGGCTCACG (9) 11.8 0.0118 P2.5 retina GTGGCTCACG (9) 12.3 0.0123 P2.5 retina TTTATTATTT (15) 12.3 0.0123 P4.5 retina GTGGCTCACG (9) 7.9 0.0079 P4.5 retina TTTATTATTT (15) 5.9 0.0059 P4.5 retina TCCATCCTCT (7) 2 0.002 P6.5 retina GTGGCTCACG (9) 10 0.01 P6.5 retina TTTATTATTT (15) 3.3 0.0033 P6.5 retina TCCATCCTCT (7) 1.7 0.0017 P10.5 crx- retina GTGGCTCACG (9) 5.6 0.0056 P10.5 crx+ retina GTGGCTCACG (9) 11.5 0.0115 P10.5 crx+ retina TTTATTATTT (15) 1.9 0.0019 Adult retinal GTGGCTCACG (9) 9.3 0.0093 Adult retinal TAGAGGTACT (2) 1.9 0.0019 Adult retinal TTTATTATTT (15) 1.9 0.0019 ONL GTGGCTCACG (9) 24.9 0.0249 ONL TTTATTATTT (15) 1.9 0.0019