Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.116713
1110050P16Rik
RIKEN cDNA 1110050P16 gene
9
68791
Mm.116713
Npat
nuclear protein in the AT region
9
9 30.0 cM
244879
Human Homolog
NPAT[nuclear protein, ataxia-telangiectasia locus]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 24 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TATGTGTGTA (
2
)
TGTATATTGT
(
3
)
4.9
0.0049
Cb medulloblastoma
TGTATATTGT
(
3
)
4.6
0.0046
P8 GC+1d culture
TGTATATTGT
(
3
)
4.6
0.0046
P8 GC+SHH+1d culture
TATGTGTGTA (
2
)
TGTATATTGT
(
3
)
2.4
0.0024
Hypothalamus
CTCTTTTCTA
TGTATATTGT
(
3
)
7.2
0.0072
E12.5 retina
CTCTTTTCTA
TGTATATTGT
(
3
)
3.8
0.0038
E14.5 retina
TATGTGTGTA (
2
)
TGTATATTGT
(
3
)
5.4
0.0054
E18.5 retina
TGTATATTGT
(
3
)
3.6
0.0036
P0.5 retina
TGTATATTGT
(
3
)
2
0.002
P2.5 retina
CTCTTTTCTA
TGTATATTGT
(
3
)
5.3
0.0053
P6.5 retina
CTGTTACCCT
(
2
)
TGTATATTGT
(
3
)
5
0.005
P10.5 crx- retina
CTGTTACCCT
(
2
)
TGTATATTGT
(
3
)
3.8
0.0038
P10.5 crx+ retina
TATGTGTGTA (
2
)
TGTATATTGT
(
3
)
3.8
0.0038
ONL
CTCTTTTCTA
CTGTTACCCT
(
2
)
3.8
0.0038
