Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.121878
Tpm1
tropomyosin 1, alpha
9
9 40.0 cM
22003
Mm.121878
AI854628
expressed sequence AI854628
9
102625
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 117 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCAAAAAAAA (
35
)
22.8
0.0228
P8 Cb GC
TTTGTTGCTT (
6
)
6.5
0.0065
P8 Cb GC
AGAACAGAAC
(
5
)
1.6
0.0016
P8 Cb GC
AGATGTGTTG
(
4
)
1.6
0.0016
P8 Cb GC
GTGAAACCCT
(
2
)
1.6
0.0016
P8 Cb GC
GTTTAAATTT (
9
)
1.6
0.0016
P8 Cb GC
TCAGCTGGGG
(
2
)
1.6
0.0016
Cb medulloblastoma
CCAAAAAAAA (
35
)
90.2
0.0902
Cb medulloblastoma
TCAGGGTAGA
(
2
)
6.9
0.0069
Cb medulloblastoma
AGAACAGAAC
(
5
)
2.3
0.0023
Cb medulloblastoma
AGATGTGTTG
(
4
)
2.3
0.0023
Cb medulloblastoma
CTTACCGTGA
(
2
)
2.3
0.0023
Cb medulloblastoma
GTGAAACCCT
(
2
)
2.3
0.0023
P8 GC+1d culture
CCAAAAAAAA (
35
)
38.8
0.0388
P8 GC+1d culture
CCCGTAGCCC
(
3
)
13.7
0.0137
P8 GC+1d culture
TTTGTTGCTT (
6
)
3.4
0.0034
P8 GC+1d culture
AAAGTCATTG
(
4
)
2.3
0.0023
P8 GC+1d culture
CCAAAGGAAG (
6
)
1.1
0.0011
P8 GC+1d culture
GCTGGAGGCT (
4
)
1.1
0.0011
P8 GC+1d culture
GTGAAACCCT
(
2
)
1.1
0.0011
P8 GC+1d culture
GTTTAAATTT (
9
)
1.1
0.0011
P8 GC+1d culture
GTTTTTTTAA (
7
)
1.1
0.0011
P8 GC+1d culture
TCCAGAAAAT
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CCAAAAAAAA (
35
)
39.8
0.0398
P8 GC+SHH+1d culture
CCCGTAGCCC
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
GAAGTCATTG (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AAAGTCCTTT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
CTTACCGTGA
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GCTGGAGGCT (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGTGGCTCA (
9
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGAAACCCT
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TCAGCTGGGG
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TGCTGGCTCT (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTGTTGCTT (
6
)
1.2
0.0012
3T3 fibroblasts
CCCGTAGCCC
(
3
)
178.8
0.1788
3T3 fibroblasts
GAAGTCATTG (
3
)
3.5
0.0035
3T3 fibroblasts
TCAGCTGGGG
(
2
)
3.5
0.0035
E15 cortex
CCAAAAAAAA (
35
)
9.9
0.0099
E15 cortex
AAAGTCATTG
(
4
)
4.9
0.0049
P1 cortex
CCAAAAAAAA (
35
)
40.9
0.0409
P1 cortex
TCCAGAAAAT
(
3
)
13.6
0.0136
P1 cortex
CCCGTAGCCC
(
3
)
9.1
0.0091
P1 cortex
AGATGTGTTG
(
4
)
4.5
0.0045
P1 cortex
CCAAAGGAAG (
6
)
4.5
0.0045
Hypothalamus
CCAAAAAAAA (
35
)
38
0.038
Hypothalamus
TTTGTTGCTT (
6
)
5.4
0.0054
Hypothalamus
AGAACAGAAC
(
5
)
1.8
0.0018
Hypothalamus
AGATGTGTTG
(
4
)
1.8
0.0018
Hypothalamus
GACGCCATCA
(
4
)
1.8
0.0018
E12.5 retina
CCAAAAAAAA (
35
)
16.9
0.0169
E12.5 retina
AAAGTCCTTT (
3
)
1.9
0.0019
E12.5 retina
CCCGTAGCCC
(
3
)
1.9
0.0019
E12.5 retina
TTTGTTGCTT (
6
)
1.9
0.0019
E14.5 retina
CCAAAAAAAA (
35
)
18.2
0.0182
E14.5 retina
GAAGTCATTG (
3
)
3.6
0.0036
E14.5 retina
GTGAAACCCT
(
2
)
1.8
0.0018
E14.5 retina
GTTTAAATTT (
9
)
1.8
0.0018
E16.5 retina
CCAAAAAAAA (
35
)
16.3
0.0163
E16.5 retina
CCCGTAGCCC
(
3
)
5.4
0.0054
E16.5 retina
CCAAAGGAAG (
6
)
1.8
0.0018
E16.5 retina
CTACAGACCA
(
2
)
1.8
0.0018
E18.5 retina
CCAAAAAAAA (
35
)
38.2
0.0382
E18.5 retina
GGGTGGCTCA (
9
)
1.8
0.0018
E18.5 retina
TGCTGGCTCT (
4
)
1.8
0.0018
E18.5 retina
TTTGTTGCTT (
6
)
1.8
0.0018
P0.5 retina
CCAAAAAAAA (
35
)
29.4
0.0294
P0.5 retina
CCCGTAGCCC
(
3
)
5.9
0.0059
P0.5 retina
GAAGTCATTG (
3
)
3.9
0.0039
P0.5 retina
GTTTTTTTAA (
7
)
2
0.002
P0.5 retina
TGCTGGCTCT (
4
)
2
0.002
P2.5 retina
CCAAAAAAAA (
35
)
44
0.044
P2.5 retina
CCCGTAGCCC
(
3
)
3.5
0.0035
P2.5 retina
AAAGTCCTTT (
3
)
1.8
0.0018
P2.5 retina
AGATGTGTTG
(
4
)
1.8
0.0018
P2.5 retina
GAAGTCATTG (
3
)
1.8
0.0018
P2.5 retina
GCTGGAGGCT (
4
)
1.8
0.0018
P2.5 retina
TTTGTTGCTT (
6
)
1.8
0.0018
P4.5 retina
CCAAAAAAAA (
35
)
39.6
0.0396
P4.5 retina
CCCGTAGCCC
(
3
)
5.9
0.0059
P4.5 retina
CTACAGACCA
(
2
)
2
0.002
P4.5 retina
GGGTGGCTCA (
9
)
2
0.002
P4.5 retina
GTTTTTTTAA (
7
)
2
0.002
P4.5 retina
TTTGTTGCTT (
6
)
2
0.002
P6.5 retina
CCAAAAAAAA (
35
)
38.3
0.0383
P6.5 retina
TTTGTTGCTT (
6
)
5
0.005
P6.5 retina
AAAGTCCTTT (
3
)
1.7
0.0017
P6.5 retina
AGATGTGTTG
(
4
)
1.7
0.0017
P6.5 retina
CCCGTAGCCC
(
3
)
1.7
0.0017
P6.5 retina
CTTACCGTGA
(
2
)
1.7
0.0017
P6.5 retina
GTTTTTTTAA (
7
)
1.7
0.0017
P10.5 crx- retina
AAAGTCCTTT (
3
)
14.9
0.0149
P10.5 crx- retina
CCAAAAAAAA (
35
)
14.9
0.0149
P10.5 crx- retina
AGATGTGTTG
(
4
)
1.9
0.0019
P10.5 crx- retina
GAAGTCATTG (
3
)
1.9
0.0019
P10.5 crx- retina
TCAGGGTAGA
(
2
)
1.9
0.0019
P10.5 crx- retina
TTTGTTGCTT (
6
)
1.9
0.0019
P10.5 crx+ retina
CCAAAAAAAA (
35
)
38.4
0.0384
P10.5 crx+ retina
TCAGGGTAGA
(
2
)
13.5
0.0135
P10.5 crx+ retina
TTTGTTGCTT (
6
)
3.8
0.0038
P10.5 crx+ retina
AAAGTCCTTT (
3
)
1.9
0.0019
P10.5 crx+ retina
AGAACAGAAC
(
5
)
1.9
0.0019
P10.5 crx+ retina
GAAGTCATTG (
3
)
1.9
0.0019
P10.5 crx+ retina
GGGTGGCTCA (
9
)
1.9
0.0019
Adult retinal
CCAAAAAAAA (
35
)
35.2
0.0352
Adult retinal
AAAGTCCTTT (
3
)
3.7
0.0037
Adult retinal
TTTGTTGCTT (
6
)
3.7
0.0037
Adult retinal
AAAGTCATTG
(
4
)
1.9
0.0019
Adult retinal
GAAGTCATTG (
3
)
1.9
0.0019
Adult retinal
GCTGGAGGCT (
4
)
1.9
0.0019
Adult retinal
GGGTGGCTCA (
9
)
1.9
0.0019
Adult retinal
GTTTTTTTAA (
7
)
1.9
0.0019
ONL
CCAAAAAAAA (
35
)
7.7
0.0077
ONL
AAAGTCCTTT (
3
)
3.8
0.0038
ONL
GGGTGGCTCA (
9
)
1.9
0.0019
ONL
GTGAAACCCT
(
2
)
1.9
0.0019
ONL
GTTTTTTTAA (
7
)
1.9
0.0019
ONL
TCCAGAAAAT
(
3
)
1.9
0.0019
