Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.128733	D0H4S114	DNA segment, human D4S114	18	18 B1	27528
Human Homolog	C5orf13[chromosome 5 open reading frame 13]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 153 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC CACTGTCCCT (2) 26.1 0.0261 P8 Cb GC TTCCTGTGTC (3) 8.2 0.0082 P8 Cb GC GGTAAAATAT (2) 4.9 0.0049 P8 Cb GC TGGGAAAAAA (8) 4.9 0.0049 P8 Cb GC TAAAAATTAA (3) 3.3 0.0033 P8 Cb GC CATCATTGGT 1.6 0.0016 P8 Cb GC TACTCTTTTG 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma TCCTGGGATG (3) 16.2 0.0162 Cb medulloblastoma TAAAAATTAA (3) 11.6 0.0116 Cb medulloblastoma CACTGTCCCT (2) 9.2 0.0092 Cb medulloblastoma GGTAAAATAT (2) 6.9 0.0069 Cb medulloblastoma TACTCTTTTG 6.9 0.0069 Cb medulloblastoma GGGGAAAAAA (28) 4.6 0.0046 Cb medulloblastoma TGGGAAAAAA (8) 4.6 0.0046 Cb medulloblastoma TTCCTGTGTC (3) 2.3 0.0023 P8 GC+1d culture CACTGTCCCT (2) 84.5 0.0845 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture GGTAAAATAT (2) 13.7 0.0137 P8 GC+1d culture CATCATTGGT 11.4 0.0114 P8 GC+1d culture TAAAAATTAA (3) 6.8 0.0068 P8 GC+1d culture TGGGAAAAAA (8) 6.8 0.0068 P8 GC+1d culture TTCCTGTGTC (3) 4.6 0.0046 P8 GC+1d culture TTCTAAGAAG (4) 3.4 0.0034 P8 GC+1d culture ATGCCCTTTT (4) 2.3 0.0023 P8 GC+1d culture TCCTGGGATG (3) 2.3 0.0023 P8 GC+1d culture GGGGAAAAAA (28) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture CACTGTCCCT (2) 42.2 0.0422 P8 GC+SHH+1d culture GGTAAAATAT (2) 29.3 0.0293 P8 GC+SHH+1d culture CATCATTGGT 8.2 0.0082 P8 GC+SHH+1d culture ATGCCCTTTT (4) 3.5 0.0035 P8 GC+SHH+1d culture TAAAAATTAA (3) 3.5 0.0035 P8 GC+SHH+1d culture TCCTGGGATG (3) 2.3 0.0023 P8 GC+SHH+1d culture TGGGAAAAAA (8) 2.3 0.0023 P8 GC+SHH+1d culture TTCCTGTGTC (3) 2.3 0.0023 P8 GC+SHH+1d culture GGAGTTTAAC (2) 1.2 0.0012 P8 GC+SHH+1d culture TTCTAAGAAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTTCTTGTGG (4) 1.2 0.0012 3T3 fibroblasts TTCCTGTGTC (3) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex CACTGTCCCT (2) 14.8 0.0148 E15 cortex TAAAAATTAA (3) 14.8 0.0148 E15 cortex TTCCTGTGTC (3) 9.9 0.0099 E15 cortex GGGGAAAAAA (28) 4.9 0.0049 E15 cortex TGGGAAAAAA (8) 4.9 0.0049 E15 cortex TTTCTTGTGG (4) 4.9 0.0049 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex CACTGTCCCT (2) 40.9 0.0409 P1 cortex TTCCTGTGTC (3) 13.6 0.0136 P1 cortex CATCATTGGT 9.1 0.0091 P1 cortex GGTAAAATAT (2) 4.5 0.0045 P1 cortex TGGGAAAAAA (8) 4.5 0.0045 P1 cortex TTCTAAGAAG (4) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus TCCTGGGATG (3) 7.2 0.0072 Hypothalamus TAAAAATTAA (3) 5.4 0.0054 Hypothalamus CACTGTCCCT (2) 3.6 0.0036 Hypothalamus GGAGTTTAAC (2) 1.8 0.0018 Hypothalamus TACTCTTTTG 1.8 0.0018 Hypothalamus TGGGAAAAAA (8) 1.8 0.0018 Hypothalamus TTCTAAGAAG (4) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina GGTAAAATAT (2) 9.4 0.0094 E12.5 retina CACTGTCCCT (2) 7.5 0.0075 E12.5 retina TTCCTGTGTC (3) 5.6 0.0056 E12.5 retina GGGGAAAAAA (28) 1.9 0.0019 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina TAAAAATTAA (3) 10.9 0.0109 E14.5 retina CACTGTCCCT (2) 7.3 0.0073 E14.5 retina CATCATTGGT 3.6 0.0036 E14.5 retina TGGGAAAAAA (8) 3.6 0.0036 E14.5 retina GGTAAAATAT (2) 1.8 0.0018 E14.5 retina TTCCTGTGTC (3) 1.8 0.0018 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina CACTGTCCCT (2) 14.5 0.0145 E16.5 retina CATCATTGGT 3.6 0.0036 E16.5 retina GGTAAAATAT (2) 3.6 0.0036 E16.5 retina TAAAAATTAA (3) 3.6 0.0036 E16.5 retina TTCTAAGAAG (4) 3.6 0.0036 E16.5 retina GGGGAAAAAA (28) 1.8 0.0018 E16.5 retina TCCTGGGATG (3) 1.8 0.0018 E16.5 retina TGGGAAAAAA (8) 1.8 0.0018 E16.5 retina TTTTTATTAA (8) 1.8 0.0018 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina TAAAAATTAA (3) 10.9 0.0109 E18.5 retina CACTGTCCCT (2) 9.1 0.0091 E18.5 retina GGTAAAATAT (2) 5.5 0.0055 E18.5 retina GGGGAAAAAA (28) 3.6 0.0036 E18.5 retina TGGGAAAAAA (8) 3.6 0.0036 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina CACTGTCCCT (2) 19.6 0.0196 P0.5 retina GGTAAAATAT (2) 9.8 0.0098 P0.5 retina TGGGAAAAAA (8) 5.9 0.0059 P0.5 retina CATCATTGGT 3.9 0.0039 P0.5 retina TTTTTATTAA (8) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina CACTGTCCCT (2) 17.6 0.0176 P2.5 retina TCCTGGGATG (3) 5.3 0.0053 P2.5 retina GGTAAAATAT (2) 3.5 0.0035 P2.5 retina ATGCCCTTTT (4) 1.8 0.0018 P2.5 retina CATCATTGGT 1.8 0.0018 P2.5 retina TAAAAATTAA (3) 1.8 0.0018 P2.5 retina TACTCTTTTG 1.8 0.0018 P2.5 retina TGGGAAAAAA (8) 1.8 0.0018 P2.5 retina TTCCTGTGTC (3) 1.8 0.0018 P2.5 retina TTCTAAGAAG (4) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina CACTGTCCCT (2) 25.8 0.0258 P4.5 retina GGTAAAATAT (2) 9.9 0.0099 P4.5 retina TCCTGGGATG (3) 5.9 0.0059 P4.5 retina TAAAAATTAA (3) 4 0.004 P4.5 retina TGGGAAAAAA (8) 2 0.002 P6.5 retina CACTGTCCCT (2) 43.4 0.0434 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GGTAAAATAT (2) 23.3 0.0233 P6.5 retina TCCTGGGATG (3) 3.3 0.0033 P6.5 retina TCTCTTGGGG (4) 3.3 0.0033 P6.5 retina GGAGTTTAAC (2) 1.7 0.0017 P6.5 retina GGGGAAAAAA (28) 1.7 0.0017 P6.5 retina TAAAAATTAA (3) 1.7 0.0017 P6.5 retina TGGGAAAAAA (8) 1.7 0.0017 P6.5 retina TTCCTGTGTC (3) 1.7 0.0017 P6.5 retina TTTCTTGTGG (4) 1.7 0.0017 P10.5 crx- retina CACTGTCCCT (2) 35.3 0.0353 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina TCCTGGGATG (3) 7.4 0.0074 P10.5 crx- retina CATCATTGGT 3.7 0.0037 P10.5 crx- retina TAAAAATTAA (3) 1.9 0.0019 P10.5 crx- retina TGGGAAAAAA (8) 1.9 0.0019 P10.5 crx- retina TTCTAAGAAG (4) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina TCCTGGGATG (3) 15.4 0.0154 P10.5 crx+ retina CACTGTCCCT (2) 11.5 0.0115 P10.5 crx+ retina CATCATTGGT 11.5 0.0115 P10.5 crx+ retina GGTAAAATAT (2) 3.8 0.0038 P10.5 crx+ retina TTCCTGTGTC (3) 3.8 0.0038 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal CACTGTCCCT (2) 7.4 0.0074 Adult retinal TCCTGGGATG (3) 3.7 0.0037 Adult retinal CATCATTGGT 1.9 0.0019 Adult retinal TGGGAAAAAA (8) 1.9 0.0019 Adult retinal TTCCTGTGTC (3) 1.9 0.0019 Adult retinal TTTTTATTAA (8) 1.9 0.0019 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL CACTGTCCCT (2) 1.9 0.0019 ONL CATCATTGGT 1.9 0.0019 ONL GGTAAAATAT (2) 1.9 0.0019 ONL TCTCTTGGGG (4) 1.9 0.0019 ONL TGGGAAAAAA (8) 1.9 0.0019 ONL TTCCTGTGTC (3) 1.9 0.0019 ONL TTTCTTGTGG (4) 1.9 0.0019