Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.130843
4833413G10Rik
RIKEN cDNA 4833413G10 gene
5
74584
Mm.130843
Pex1
peroxisome biogenesis factor 1
5
71382
Mm.130843
E330005K07Rik
RIKEN cDNA E330005K07 gene
5
320623
Human Homolog
PEX1[peroxisome biogenesis factor 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 57 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
ACTGTCTCCC (
5
)
1.6
0.0016
P8 Cb GC
GTGTCTGTTC
(
9
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
CAAAAAAAAG (
9
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
CAAAAAAAAG (
9
)
2.3
0.0023
P8 GC+1d culture
ACTGTCTCCC (
5
)
1.1
0.0011
P8 GC+1d culture
CAATTATTCT
(
3
)
1.1
0.0011
P8 GC+1d culture
GTGTCTGTTC
(
9
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
ACTGTCTCCC (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGTCTGTTC
(
9
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
ACAACACAGG
(
6
)
3.5
0.0035
3T3 fibroblasts
GTGTCTGTTC
(
9
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
GTGTCTGTTC
(
9
)
9.1
0.0091
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
ACAACACAGG
(
6
)
1.8
0.0018
Hypothalamus
GTGTCTGTTC
(
9
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
ACTGTCTCCC (
5
)
3.8
0.0038
E12.5 retina
GTGTCTGTTC
(
9
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
GTGTCTGTTC
(
9
)
10.9
0.0109
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
GTGTCTGTTC
(
9
)
5.4
0.0054
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GTGTCTGTTC
(
9
)
5.5
0.0055
E18.5 retina
CAAAAAAAAG (
9
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
ACAACACAGG
(
6
)
3.9
0.0039
P0.5 retina
CAAAAAAAAG (
9
)
3.9
0.0039
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
GTGTCTGTTC
(
9
)
5.3
0.0053
P2.5 retina
ACAACACAGG
(
6
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
GTGTCTGTTC
(
9
)
4
0.004
P4.5 retina
CAATTATTCT
(
3
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
ACTGTCTCCC (
5
)
5
0.005
P6.5 retina
GTGTCTGTTC
(
9
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
ACTGTCTCCC (
5
)
5.6
0.0056
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
ACTGTCTCCC (
5
)
3.8
0.0038
P10.5 crx+ retina
CAAAAAAAAG (
9
)
1.9
0.0019
P10.5 crx+ retina
GTGTCTGTTC
(
9
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GTGTCTGTTC
(
9
)
3.7
0.0037
Adult retinal
ACTGTCTCCC (
5
)
1.9
0.0019
Adult retinal
CAAAAAAAAG (
9
)
1.9
0.0019
Adult retinal
CAATTATTCT
(
3
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
GTGTCTGTTC
(
9
)
13.4
0.0134
