Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.133101	Shprh	SNF2 histone linker PHD RING helicase	10		268281
Gene Ontology	ATP binding | ATP dependent helicase activity | chromosome organization and biogenesis (sensu Eukarya) | DNA binding | helicase activity | nucleic acid binding | nucleosome | nucleosome assembly | nucleus | regulation of transcription, DNA-dependent
Human Homolog	SHPRH[SNF2 histone linker PHD RING helicase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 42 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATAAACTGT (4) 3.3 0.0033 P8 Cb GC AATACACAGA (3) 1.6 0.0016 Cb medulloblastoma CATAAACTGT (4) 2.3 0.0023 P8 GC+1d culture TGCTATGTTC (2) 2.3 0.0023 P8 GC+1d culture AATACACAGA (3) 1.1 0.0011 P8 GC+1d culture ACAATAAAGT (4) 1.1 0.0011 P8 GC+1d culture GGCAGGGTTC (3) 1.1 0.0011 P8 GC+SHH+1d culture TGCTATGTTC (2) 2.3 0.0023 P8 GC+SHH+1d culture ACAATAAAGT (4) 1.2 0.0012 P8 GC+SHH+1d culture CATAAACTGT (4) 1.2 0.0012 E15 cortex GGTGAAACTA 9.9 0.0099 P1 cortex ACAATAAAGT (4) 4.5 0.0045 Hypothalamus CATAAACTGT (4) 3.6 0.0036 Hypothalamus TGCTATGTTC (2) 1.8 0.0018 E12.5 retina CATAAACTGT (4) 5.6 0.0056 E12.5 retina AATACACAGA (3) 1.9 0.0019 E12.5 retina TAAAAACAAA (5) 1.9 0.0019 E14.5 retina GATGACTTTG (11) 1.8 0.0018 E14.5 retina TGCTATGTTC (2) 1.8 0.0018 E18.5 retina AAGTAAATGG 1.8 0.0018 E18.5 retina CATAAACTGT (4) 1.8 0.0018 E18.5 retina TGCTATGTTC (2) 1.8 0.0018 P0.5 retina GGTGAAACTA 3.9 0.0039 P0.5 retina GATGACTTTG (11) 2 0.002 P2.5 retina CATAAACTGT (4) 1.8 0.0018 P2.5 retina TGCTATGTTC (2) 1.8 0.0018 P4.5 retina CATAAACTGT (4) 2 0.002 P6.5 retina GATGACTTTG (11) 1.7 0.0017 P6.5 retina TAAAAACAAA (5) 1.7 0.0017 P6.5 retina TGCTATGTTC (2) 1.7 0.0017 P10.5 crx- retina CATAAACTGT (4) 1.9 0.0019 P10.5 crx- retina GGCAGGGTTC (3) 1.9 0.0019 P10.5 crx- retina TAAAAACAAA (5) 1.9 0.0019 P10.5 crx+ retina CATAAACTGT (4) 3.8 0.0038 P10.5 crx+ retina TGCTATGTTC (2) 1.9 0.0019 Adult retinal CATAAACTGT (4) 1.9 0.0019 Adult retinal GGCAGGGTTC (3) 1.9 0.0019 ONL AAGTAAATGG 3.8 0.0038 ONL CATAAACTGT (4) 3.8 0.0038 ONL GATGACTTTG (11) 1.9 0.0019 ONL TAAAAACAAA (5) 1.9 0.0019 ONL TGCTATGTTC (2) 1.9 0.0019