Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.140761	Dnajc5	DnaJ (Hsp40) homolog, subfamily C, member 5	2	2 106.0 cM	13002
Gene Ontology	membrane | protein folding
Human Homolog	DNAJC5[DnaJ (Hsp40) homolog, subfamily C, member 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 158 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTTGGTAG (2) 11.4 0.0114 P8 Cb GC CCTCTGTTTG (3) 8.2 0.0082 P8 Cb GC TTCTTGTGAC (2) 8.2 0.0082 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC ACATTAAAAA (4) 3.3 0.0033 P8 Cb GC CAAGCTCATC (2) 3.3 0.0033 P8 Cb GC CCACTGCTTA (2) 1.6 0.0016 P8 Cb GC GAAGTTTTGA (4) 1.6 0.0016 P8 Cb GC TGTCCCAGCA (2) 1.6 0.0016 P8 Cb GC TTCTTGGACT 1.6 0.0016 Cb medulloblastoma ACATTAAAAA (4) 20.8 0.0208 Cb medulloblastoma CCTCTGTTTG (3) 11.6 0.0116 Cb medulloblastoma CCACTGCTTA (2) 2.3 0.0023 Cb medulloblastoma GGTTCACAGC 2.3 0.0023 Cb medulloblastoma TTCTTGGACT 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture CCTCTGTTTG (3) 9.1 0.0091 P8 GC+1d culture GATTTGGTAG (2) 9.1 0.0091 P8 GC+1d culture ACATTAAAAA (4) 4.6 0.0046 P8 GC+1d culture GTGAGCTGTC 4.6 0.0046 P8 GC+1d culture TTCTTGTGAC (2) 4.6 0.0046 P8 GC+1d culture CCACTGCTTA (2) 2.3 0.0023 P8 GC+1d culture GTGTCTGTTA (2) 2.3 0.0023 P8 GC+1d culture ACAGGCCTGC 1.1 0.0011 P8 GC+1d culture CAAGCTCATC (2) 1.1 0.0011 P8 GC+1d culture GATCAGCAGG (3) 1.1 0.0011 P8 GC+SHH+1d culture GATTTGGTAG (2) 16.4 0.0164 P8 GC+SHH+1d culture CCTCTGTTTG (3) 8.2 0.0082 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture ACATTAAAAA (4) 4.7 0.0047 P8 GC+SHH+1d culture GTGAGCTGTC 2.3 0.0023 P8 GC+SHH+1d culture TTCTTGTGAC (2) 2.3 0.0023 P8 GC+SHH+1d culture CCACTGCTTA (2) 1.2 0.0012 P8 GC+SHH+1d culture GATCAGCAGG (3) 1.2 0.0012 P8 GC+SHH+1d culture GGTTCACAGC 1.2 0.0012 P8 GC+SHH+1d culture GTGTCTGTTA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGTCCCAGCA (2) 1.2 0.0012 3T3 fibroblasts CCTCTGTTTG (3) 7 0.007 3T3 fibroblasts CAAGCTCATC (2) 3.5 0.0035 3T3 fibroblasts GTGCTGTCTG (4) 3.5 0.0035 3T3 fibroblasts TTCTTGTGAC (2) 3.5 0.0035 E15 cortex CCTCTGTTTG (3) 14.8 0.0148 E15 cortex GATTTGGTAG (2) 14.8 0.0148 E15 cortex CAAGCTCATC (2) 9.9 0.0099 E15 cortex GTGAGCTGTC 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex CCTCTGTTTG (3) 27.3 0.0273 P1 cortex CAAGCTCATC (2) 4.5 0.0045 P1 cortex GATTTGGTAG (2) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus CCTCTGTTTG (3) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus ACATTAAAAA (4) 3.6 0.0036 Hypothalamus CAGTATTTAA (4) 3.6 0.0036 Hypothalamus GTGTCTGTTA (2) 3.6 0.0036 Hypothalamus CAAGCTCATC (2) 1.8 0.0018 Hypothalamus GATTTGGTAG (2) 1.8 0.0018 Hypothalamus GCGCCTGCCT (4) 1.8 0.0018 Hypothalamus GGTTCACAGC 1.8 0.0018 E12.5 retina GATTTGGTAG (2) 20.7 0.0207 E12.5 retina CCTCTGTTTG (3) 9.4 0.0094 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ACATTAAAAA (4) 3.8 0.0038 E12.5 retina CCACTGCTTA (2) 3.8 0.0038 E12.5 retina GTGAGCTGTC 3.8 0.0038 E12.5 retina CAAGCTCATC (2) 1.9 0.0019 E12.5 retina TTCTTGGACT 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CCTCTGTTTG (3) 12.8 0.0128 E14.5 retina ACATTAAAAA (4) 9.1 0.0091 E14.5 retina TTCTTGTGAC (2) 5.5 0.0055 E14.5 retina GATTTGGTAG (2) 3.6 0.0036 E14.5 retina ACAGGCCTGC 1.8 0.0018 E14.5 retina GAAGTTTTGA (4) 1.8 0.0018 E14.5 retina GTGAGCTGTC 1.8 0.0018 E16.5 retina CCTCTGTTTG (3) 9.1 0.0091 E16.5 retina TTCTTGTGAC (2) 9.1 0.0091 E16.5 retina GATTTGGTAG (2) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GAAGTTTTGA (4) 3.6 0.0036 E16.5 retina ACATTAAAAA (4) 1.8 0.0018 E16.5 retina GATCAGCAGG (3) 1.8 0.0018 E16.5 retina GCGCCTGCCT (4) 1.8 0.0018 E16.5 retina TTCTTGGACT 1.8 0.0018 E18.5 retina CCTCTGTTTG (3) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GAAGTTTTGA (4) 5.5 0.0055 E18.5 retina GATTTGGTAG (2) 5.5 0.0055 E18.5 retina ACATTAAAAA (4) 3.6 0.0036 E18.5 retina CAAGCTCATC (2) 1.8 0.0018 E18.5 retina CCACTGCTTA (2) 1.8 0.0018 E18.5 retina GATCAGCAGG (3) 1.8 0.0018 E18.5 retina GCGCCTGCCT (4) 1.8 0.0018 P0.5 retina GATTTGGTAG (2) 15.7 0.0157 P0.5 retina CCTCTGTTTG (3) 13.7 0.0137 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina ACAGGCCTGC 2 0.002 P0.5 retina CCACTGCTTA (2) 2 0.002 P0.5 retina GATCAGCAGG (3) 2 0.002 P0.5 retina GTGAGCTGTC 2 0.002 P0.5 retina TTCTTGTGAC (2) 2 0.002 P2.5 retina CCTCTGTTTG (3) 12.3 0.0123 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina ACATTAAAAA (4) 5.3 0.0053 P2.5 retina CCACTGCTTA (2) 1.8 0.0018 P2.5 retina GATTTGGTAG (2) 1.8 0.0018 P2.5 retina GTGAGCTGTC 1.8 0.0018 P4.5 retina CCTCTGTTTG (3) 29.7 0.0297 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina ACATTAAAAA (4) 7.9 0.0079 P4.5 retina GATTTGGTAG (2) 4 0.004 P4.5 retina GGTTCACAGC 4 0.004 P4.5 retina TTCTTGTGAC (2) 4 0.004 P4.5 retina CAAGCTCATC (2) 2 0.002 P4.5 retina CAGTATTTAA (4) 2 0.002 P6.5 retina CCTCTGTTTG (3) 26.7 0.0267 P6.5 retina GTGAGCTGTC 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina ACATTAAAAA (4) 6.7 0.0067 P6.5 retina GTGCTGTCTG (4) 3.3 0.0033 P6.5 retina CAAGCTCATC (2) 1.7 0.0017 P6.5 retina GATCAGCAGG (3) 1.7 0.0017 P6.5 retina GGTTCACAGC 1.7 0.0017 P10.5 crx- retina CCTCTGTTTG (3) 31.6 0.0316 P10.5 crx- retina ACATTAAAAA (4) 14.9 0.0149 P10.5 crx- retina GATTTGGTAG (2) 5.6 0.0056 P10.5 crx- retina GTGAGCTGTC 3.7 0.0037 P10.5 crx- retina CCACTGCTTA (2) 1.9 0.0019 P10.5 crx- retina GTGTCTGTTA (2) 1.9 0.0019 P10.5 crx- retina TTCTTGGACT 1.9 0.0019 P10.5 crx+ retina CCTCTGTTTG (3) 21.1 0.0211 P10.5 crx+ retina ACAGGCCTGC 3.8 0.0038 P10.5 crx+ retina ACATTAAAAA (4) 3.8 0.0038 P10.5 crx+ retina GATCAGCAGG (3) 3.8 0.0038 P10.5 crx+ retina GATTTGGTAG (2) 3.8 0.0038 P10.5 crx+ retina GGTTCACAGC 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GTGAGCTGTC 1.9 0.0019 Adult retinal CCTCTGTTTG (3) 25.9 0.0259 Adult retinal CAAGCTCATC (2) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GATTTGGTAG (2) 3.7 0.0037 Adult retinal CCACTGCTTA (2) 1.9 0.0019 Adult retinal GATCAGCAGG (3) 1.9 0.0019 Adult retinal GTGTCTGTTA (2) 1.9 0.0019 Adult retinal TGTCCCAGCA (2) 1.9 0.0019 Adult retinal TTCTTGGACT 1.9 0.0019 Adult retinal TTCTTGTGAC (2) 1.9 0.0019 ONL CCTCTGTTTG (3) 9.6 0.0096 ONL ACATTAAAAA (4) 3.8 0.0038 ONL GGTTCACAGC 3.8 0.0038 ONL GTGAGCTGTC 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL ACAGGCCTGC 1.9 0.0019 ONL CCACTGCTTA (2) 1.9 0.0019 ONL GAAGTTTTGA (4) 1.9 0.0019 ONL GATCAGCAGG (3) 1.9 0.0019