Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.142729	Tmsb4x	thymosin, beta 4, X chromosome	X	X 72.5 cM	19241
Gene Ontology	actin binding | cytoplasm | cytoskeleton | cytoskeleton organization and biogenesis
Human Homolog	TMSB4X[thymosin, beta 4, X-linked]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 173 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGGTGAAGG (4) 474.7 0.4747 P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAGTTCTTT (2) 34.3 0.0343 P8 Cb GC TCTGACAAAC 16.3 0.0163 P8 Cb GC CTGGTGAAGG (3) 9.8 0.0098 P8 Cb GC GTGGTTGAAA (8) 9.8 0.0098 P8 Cb GC TTGGCGAAGG (2) 6.5 0.0065 P8 Cb GC TTGGAGAAGG (4) 3.3 0.0033 P8 Cb GC CTGAAGATCA (8) 1.6 0.0016 P8 Cb GC GGCCAACAAG (3) 1.6 0.0016 P8 Cb GC TAGGTGAAGG (2) 1.6 0.0016 P8 Cb GC TCGGTGAAGG 1.6 0.0016 P8 Cb GC TGGCACTGTG (3) 1.6 0.0016 P8 Cb GC TGGTGAAGGA (3) 1.6 0.0016 P8 Cb GC TTGGTGAAGA (3) 1.6 0.0016 P8 Cb GC TTGGTGGAGG (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TTGGTGAAGG (4) 39.3 0.0393 Cb medulloblastoma TTGGAGAAGG (4) 27.7 0.0277 Cb medulloblastoma GTGGTTGAAA (8) 4.6 0.0046 Cb medulloblastoma CAAGTTCTTT (2) 2.3 0.0023 P8 GC+1d culture TTGGTGAAGG (4) 607.3 0.6073 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CAAGTTCTTT (2) 11.4 0.0114 P8 GC+1d culture TGGCACTGTG (3) 8 0.008 P8 GC+1d culture GTGGTTGAAA (8) 6.8 0.0068 P8 GC+1d culture CTGGTGAAGG (3) 5.7 0.0057 P8 GC+1d culture TCTGACAAAC 4.6 0.0046 P8 GC+1d culture TTGGAGAAGG (4) 4.6 0.0046 P8 GC+1d culture TTGGCGAAGG (2) 4.6 0.0046 P8 GC+1d culture TGGTGAAGGA (3) 3.4 0.0034 P8 GC+1d culture GTTGCTGGAA (4) 1.1 0.0011 P8 GC+1d culture TCGGTGAAGG 1.1 0.0011 P8 GC+1d culture TTGGTGAAAG 1.1 0.0011 P8 GC+1d culture TTGGTGAAGA (3) 1.1 0.0011 P8 GC+1d culture TTGGTGAATG (2) 1.1 0.0011 P8 GC+1d culture TTGGTGGAGG (5) 1.1 0.0011 P8 GC+SHH+1d culture TTGGTGAAGG (4) 336 0.336 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAGTTCTTT (2) 18.7 0.0187 P8 GC+SHH+1d culture GTGGTTGAAA (8) 9.4 0.0094 P8 GC+SHH+1d culture GTTGCTGGAA (4) 5.9 0.0059 P8 GC+SHH+1d culture TGGCACTGTG (3) 5.9 0.0059 P8 GC+SHH+1d culture TCTGACAAAC 4.7 0.0047 P8 GC+SHH+1d culture TTGGCGAAGG (2) 2.3 0.0023 P8 GC+SHH+1d culture CTGAAGATCA (8) 1.2 0.0012 P8 GC+SHH+1d culture CTGGTGAAGG (3) 1.2 0.0012 P8 GC+SHH+1d culture GGCCAACAAG (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGCACTACT (8) 1.2 0.0012 P8 GC+SHH+1d culture TCGGTGAAGG 1.2 0.0012 P8 GC+SHH+1d culture TTGGAGAAGG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTGGTGAAAG 1.2 0.0012 P8 GC+SHH+1d culture TTGGTGAAGA (3) 1.2 0.0012 P8 GC+SHH+1d culture TTGGTGGAGG (5) 1.2 0.0012 3T3 fibroblasts TTGGTGAAGG (4) 49.1 0.0491 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GGGCACTACT (8) 3.5 0.0035 3T3 fibroblasts TCGGTGAAGG 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TTGGTGAAGG (4) 148.4 0.1484 E15 cortex TCTGACAAAC 54.4 0.0544 E15 cortex GTGGTTGAAA (8) 34.6 0.0346 E15 cortex CAAGTTCTTT (2) 9.9 0.0099 E15 cortex TTGGTGAAGA (3) 4.9 0.0049 E15 cortex TTGGTGGAGG (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TTGGTGAAGG (4) 222.7 0.2227 P1 cortex GTGGTTGAAA (8) 9.1 0.0091 P1 cortex TTGGAGAAGG (4) 9.1 0.0091 P1 cortex TCGGTGAAGG 4.5 0.0045 P1 cortex TTGGCGAAGG (2) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TTGGTGAAGG (4) 96 0.096 Hypothalamus GTGGTTGAAA (8) 14.5 0.0145 Hypothalamus CAAGTTCTTT (2) 9.1 0.0091 Hypothalamus TCTGACAAAC 7.2 0.0072 Hypothalamus TTGGAGAAGG (4) 7.2 0.0072 Hypothalamus GTTGCTGGAA (4) 1.8 0.0018 Hypothalamus TCTGATAAAC (2) 1.8 0.0018 Hypothalamus TGGCACTGTG (3) 1.8 0.0018 E12.5 retina TTGGTGAAGG (4) 142.7 0.1427 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GTGGTTGAAA (8) 28.2 0.0282 E12.5 retina CAAGTTCTTT (2) 7.5 0.0075 E12.5 retina GTTGCTGGAA (4) 5.6 0.0056 E12.5 retina CTGAAGATCA (8) 1.9 0.0019 E12.5 retina TCTGACAAAC 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TTGGTGAAGG (4) 34.6 0.0346 E14.5 retina GTGGTTGAAA (8) 23.7 0.0237 E14.5 retina TCTGATAAAC (2) 3.6 0.0036 E14.5 retina CTGAAGATCA (8) 1.8 0.0018 E14.5 retina TAGGTGAAGG (2) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TTGGTGAAGG (4) 32.6 0.0326 E16.5 retina GTGGTTGAAA (8) 23.5 0.0235 E16.5 retina TCTGACAAAC 5.4 0.0054 E16.5 retina CAAGTTCTTT (2) 3.6 0.0036 E16.5 retina TCTGATAAAC (2) 1.8 0.0018 E16.5 retina TGGCACTGTG (3) 1.8 0.0018 E16.5 retina TTGGAGAAGG (4) 1.8 0.0018 E16.5 retina TTGGTGAATG (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TTGGTGAAGG (4) 76.4 0.0764 E18.5 retina GTGGTTGAAA (8) 61.8 0.0618 E18.5 retina CAAGTTCTTT (2) 5.5 0.0055 E18.5 retina TGGCACTGTG (3) 1.8 0.0018 E18.5 retina TTGGAGAAGG (4) 1.8 0.0018 E18.5 retina TTGGTGAAAG 1.8 0.0018 E18.5 retina TTGGTGAATG (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TTGGTGAAGG (4) 102.1 0.1021 P0.5 retina GTGGTTGAAA (8) 17.7 0.0177 P0.5 retina TGGCACTGTG (3) 5.9 0.0059 P0.5 retina CAAGTTCTTT (2) 3.9 0.0039 P0.5 retina CTGGTGAAGG (3) 3.9 0.0039 P0.5 retina TCTGATAAAC (2) 3.9 0.0039 P0.5 retina CTGAAGATCA (8) 2 0.002 P0.5 retina GTTGCTGGAA (4) 2 0.002 P0.5 retina TCTGACAAAC 2 0.002 P0.5 retina TTGGAGAAGG (4) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TTGGTGAAGG (4) 80.9 0.0809 P2.5 retina GTGGTTGAAA (8) 19.4 0.0194 P2.5 retina CAAGTTCTTT (2) 3.5 0.0035 P2.5 retina CTGAAGATCA (8) 3.5 0.0035 P2.5 retina TCTGACAAAC 3.5 0.0035 P2.5 retina TCTGATAAAC (2) 3.5 0.0035 P2.5 retina GTTGCTGGAA (4) 1.8 0.0018 P2.5 retina TTGGAGAAGG (4) 1.8 0.0018 P2.5 retina TTGGTGAATG (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TTGGTGAAGG (4) 87.2 0.0872 P4.5 retina GTGGTTGAAA (8) 17.8 0.0178 P4.5 retina CAAGTTCTTT (2) 7.9 0.0079 P4.5 retina TTGGAGAAGG (4) 5.9 0.0059 P4.5 retina TAGGTGAAGG (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TTGGTGAAGG (4) 95 0.095 P6.5 retina GTGGTTGAAA (8) 11.7 0.0117 P6.5 retina CAAGTTCTTT (2) 5 0.005 P6.5 retina TCTGACAAAC 3.3 0.0033 P6.5 retina TGGCACTGTG (3) 1.7 0.0017 P6.5 retina TGGTGAAGGA (3) 1.7 0.0017 P6.5 retina TTGGAGAAGG (4) 1.7 0.0017 P6.5 retina TTGGTGAATG (2) 1.7 0.0017 P10.5 crx- retina TTGGTGAAGG (4) 65 0.065 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TCTGATAAAC (2) 3.7 0.0037 P10.5 crx- retina CTGAAGATCA (8) 1.9 0.0019 P10.5 crx- retina GGCCAACAAG (3) 1.9 0.0019 P10.5 crx- retina GTGGTTGAAA (8) 1.9 0.0019 P10.5 crx- retina TTGGAGAAGG (4) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TTGGTGAAGG (4) 88.4 0.0884 P10.5 crx+ retina CAAGTTCTTT (2) 9.6 0.0096 P10.5 crx+ retina GTGGTTGAAA (8) 3.8 0.0038 P10.5 crx+ retina CTGAAGATCA (8) 1.9 0.0019 P10.5 crx+ retina TCTGACAAAC 1.9 0.0019 P10.5 crx+ retina TCTGATAAAC (2) 1.9 0.0019 P10.5 crx+ retina TTGGAGAAGG (4) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TTGGTGAAGG (4) 20.4 0.0204 Adult retinal GTGGTTGAAA (8) 3.7 0.0037 Adult retinal TTGGAGAAGG (4) 3.7 0.0037 Adult retinal CAAGTTCTTT (2) 1.9 0.0019 Adult retinal GGGCACTACT (8) 1.9 0.0019 Adult retinal TGGCACTGTG (3) 1.9 0.0019 Adult retinal TTGGCGAAGG (2) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TTGGTGAAGG (4) 17.2 0.0172 ONL TCTGACAAAC 5.7 0.0057 ONL GGCCAACAAG (3) 1.9 0.0019