Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1444	Cops7a	COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	6	6 58.4 cM	26894
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Human Homolog	COPS7A[COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 92 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC GGGAAGGGGG (23) 4.9 0.0049 P8 Cb GC ACACAGAAAT (3) 3.3 0.0033 P8 Cb GC GGCTGAGGGA (2) 3.3 0.0033 P8 Cb GC GTGCTGGAGG (10) 3.3 0.0033 P8 Cb GC GAAAAATAAA (9) 1.6 0.0016 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma ACACAGAAAT (3) 25.4 0.0254 Cb medulloblastoma GGGAAGGGGG (23) 13.9 0.0139 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture GGGAAGGGGG (23) 4.6 0.0046 P8 GC+1d culture ACACAGAAAT (3) 2.3 0.0023 P8 GC+1d culture GGCTGAGGGA (2) 1.1 0.0011 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture ACACAGAAAT (3) 3.5 0.0035 P8 GC+SHH+1d culture GGGAAGGGGG (23) 2.3 0.0023 P8 GC+SHH+1d culture GTGCTGGAGG (10) 2.3 0.0023 P8 GC+SHH+1d culture GAAAAATAAA (9) 1.2 0.0012 P8 GC+SHH+1d culture TCCTAACAAT 1.2 0.0012 3T3 fibroblasts GGCTGAGGGA (2) 7 0.007 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts GTGCTGGAGG (10) 3.5 0.0035 E15 cortex GGGAAGGGGG (23) 14.8 0.0148 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex GGCTCACCCC (8) 4.9 0.0049 E15 cortex GGCTGAGGGA (2) 4.9 0.0049 E15 cortex GGGAAAGGGG (17) 4.9 0.0049 E15 cortex GTGCTGGAGG (10) 4.9 0.0049 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex GGGAAGGGGG (23) 9.1 0.0091 P1 cortex GTTTCTCAGA (4) 4.5 0.0045 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus ACACAGAAAT (3) 21.7 0.0217 Hypothalamus GGGAAGGGGG (23) 3.6 0.0036 Hypothalamus GTGCTGGAGG (10) 1.8 0.0018 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina GTGCTGGAGG (10) 5.6 0.0056 E12.5 retina ACACAGAAAT (3) 3.8 0.0038 E12.5 retina GGGAAAGGGG (17) 3.8 0.0038 E12.5 retina GGGAAGGGGG (23) 1.9 0.0019 E12.5 retina GTTTCTCAGA (4) 1.9 0.0019 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina ACACAGAAAT (3) 23.7 0.0237 E14.5 retina GTGCTGGAGG (10) 3.6 0.0036 E14.5 retina GAAAAATAAA (9) 1.8 0.0018 E14.5 retina GGCTCACCCC (8) 1.8 0.0018 E14.5 retina GGGAAGGGGG (23) 1.8 0.0018 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina ACACAGAAAT (3) 9.1 0.0091 E16.5 retina GTGCTGGAGG (10) 3.6 0.0036 E16.5 retina GAAAAATAAA (9) 1.8 0.0018 E16.5 retina GGGAAAGGGG (17) 1.8 0.0018 E16.5 retina GGGAAGGGGG (23) 1.8 0.0018 E16.5 retina TCCTAACAAT 1.8 0.0018 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina ACACAGAAAT (3) 18.2 0.0182 E18.5 retina GAAAAATAAA (9) 9.1 0.0091 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina ACACAGAAAT (3) 3.9 0.0039 P0.5 retina GGCTGAGGGA (2) 2 0.002 P0.5 retina GGGAAGGGGG (23) 2 0.002 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina ACACAGAAAT (3) 7 0.007 P2.5 retina GAAAAATAAA (9) 5.3 0.0053 P2.5 retina GGGAAGGGGG (23) 5.3 0.0053 P2.5 retina GTGCTGGAGG (10) 3.5 0.0035 P2.5 retina TCCTAACAAT 1.8 0.0018 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina ACACAGAAAT (3) 11.9 0.0119 P4.5 retina GGGAAGGGGG (23) 7.9 0.0079 P4.5 retina GAAAAATAAA (9) 4 0.004 P4.5 retina GGCTCACCCC (8) 2 0.002 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina GGGAAGGGGG (23) 15 0.015 P6.5 retina GTGCTGGAGG (10) 13.3 0.0133 P6.5 retina ACACAGAAAT (3) 1.7 0.0017 P10.5 crx- retina ACACAGAAAT (3) 20.4 0.0204 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina GGGAAGGGGG (23) 11.1 0.0111 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina GGGAAGGGGG (23) 11.5 0.0115 P10.5 crx+ retina ACACAGAAAT (3) 5.8 0.0058 P10.5 crx+ retina GTGCTGGAGG (10) 5.8 0.0058 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal GGGAAGGGGG (23) 11.1 0.0111 Adult retinal ACACAGAAAT (3) 7.4 0.0074 Adult retinal GTGCTGGAGG (10) 3.7 0.0037 Adult retinal TCCTAACAAT 1.9 0.0019 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL GTTTCTCAGA (4) 3.8 0.0038 ONL ACACAGAAAT (3) 1.9 0.0019 ONL GGGAAGGGGG (23) 1.9 0.0019