Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.145488	D4Ertd100e	DNA segment, Chr 4, ERATO Doi 100, expressed	4	4 61.0 cM	52213
Mm.145488	Yars	tyrosyl-tRNA synthetase	4		107271
Gene Ontology	apoptosis | ATP binding | cell motility | cytoplasm | extracellular space | interleukin-8 receptor binding | ligase activity | nucleic acid binding | protein biosynthesis | RNA binding | signal transducer activity | soluble fraction | tRNA aminoacylation for protein translation | tRNA binding | tRNA ligase activity | tyrosine-tRNA ligase activity | tyrosyl-tRNA aminoacylation
Human Homolog	YARS[tyrosyl-tRNA synthetase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 130 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CAAATTAAAA (5) 4.9 0.0049 P8 Cb GC ACAAAGCTGT (4) 1.6 0.0016 P8 Cb GC CCTTTAGTCC (27) 1.6 0.0016 P8 Cb GC GAAACCTGGG (8) 1.6 0.0016 P8 Cb GC GGGGTTTTCC (7) 1.6 0.0016 P8 Cb GC TGGTTTCTGG (10) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma ACAAAGCTGT (4) 4.6 0.0046 Cb medulloblastoma ATTTGAAAAA (2) 2.3 0.0023 Cb medulloblastoma GGGGTTTTCC (7) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CCTTTAGTCC (27) 10.3 0.0103 P8 GC+1d culture GGGGTTTTCC (7) 5.7 0.0057 P8 GC+1d culture ACAAAGCTGT (4) 3.4 0.0034 P8 GC+1d culture CAAATTAAAA (5) 3.4 0.0034 P8 GC+1d culture GGGTTTTCCC (4) 2.3 0.0023 P8 GC+1d culture TGGTTTCTGG (10) 2.3 0.0023 P8 GC+1d culture GTCCTCTTTC (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture CAAATTAAAA (5) 8.2 0.0082 P8 GC+SHH+1d culture GGGTTTTCCC (4) 4.7 0.0047 P8 GC+SHH+1d culture GTCCTCTTTC (3) 4.7 0.0047 P8 GC+SHH+1d culture ACAAAGCTGT (4) 3.5 0.0035 P8 GC+SHH+1d culture CCTTTAGTCC (27) 3.5 0.0035 P8 GC+SHH+1d culture TGGTTTCTGG (10) 3.5 0.0035 P8 GC+SHH+1d culture GGGGTTTTCC (7) 2.3 0.0023 P8 GC+SHH+1d culture ATTTGAAAAA (2) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GGGTTTTCCC (4) 3.5 0.0035 3T3 fibroblasts TGGTTTCTGG (10) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CCTTTAGTCC (27) 9.9 0.0099 E15 cortex GGGTTTTCCC (4) 9.9 0.0099 E15 cortex GGGGTTTTCC (7) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex CCTTTAGTCC (27) 27.3 0.0273 P1 cortex GTCCTCTTTC (3) 9.1 0.0091 P1 cortex ACAAAGCTGT (4) 4.5 0.0045 P1 cortex CAAATTAAAA (5) 4.5 0.0045 P1 cortex TGGTTTCTGG (10) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GGGTTTTCCC (4) 5.4 0.0054 Hypothalamus CCTTTAGTCC (27) 3.6 0.0036 Hypothalamus ACAAAGCTGT (4) 1.8 0.0018 Hypothalamus ATTTGAAAAA (2) 1.8 0.0018 Hypothalamus GGGGTTTTCC (7) 1.8 0.0018 Hypothalamus TGGTTTCTGG (10) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CAAATTAAAA (5) 5.6 0.0056 E12.5 retina CCTTTAGTCC (27) 5.6 0.0056 E12.5 retina GTCCTCTTTC (3) 5.6 0.0056 E12.5 retina GAAACTTGGG (13) 3.8 0.0038 E12.5 retina TGGTTTCTGG (10) 3.8 0.0038 E12.5 retina GAAACCTGGG (8) 1.9 0.0019 E12.5 retina GGGGTTTTCC (7) 1.9 0.0019 E12.5 retina GGGTTTTCCC (4) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina CCTTTAGTCC (27) 14.6 0.0146 E14.5 retina TGGTTTCTGG (10) 9.1 0.0091 E14.5 retina CAAATTAAAA (5) 7.3 0.0073 E14.5 retina ACAAAGCTGT (4) 5.5 0.0055 E14.5 retina GGGGTTTTCC (7) 5.5 0.0055 E14.5 retina ATTTGAAAAA (2) 1.8 0.0018 E14.5 retina GAAACTTGGG (13) 1.8 0.0018 E14.5 retina GGGTTTTCCC (4) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TGGTTTCTGG (10) 18.1 0.0181 E16.5 retina CAAATTAAAA (5) 5.4 0.0054 E16.5 retina CCTTTAGTCC (27) 5.4 0.0054 E16.5 retina GTCCTCTTTC (3) 3.6 0.0036 E16.5 retina GGGGTTTTCC (7) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina CAAATTAAAA (5) 16.4 0.0164 E18.5 retina CCTTTAGTCC (27) 5.5 0.0055 E18.5 retina GGGTTTTCCC (4) 5.5 0.0055 E18.5 retina GGGGTTTTCC (7) 3.6 0.0036 E18.5 retina TGGTTTCTGG (10) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina CAAATTAAAA (5) 7.9 0.0079 P0.5 retina CCTTTAGTCC (27) 7.9 0.0079 P0.5 retina GGGTTTTCCC (4) 3.9 0.0039 P0.5 retina TGGTTTCTGG (10) 3.9 0.0039 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CAAATTAAAA (5) 10.6 0.0106 P2.5 retina GGGGTTTTCC (7) 10.6 0.0106 P2.5 retina TGGTTTCTGG (10) 7 0.007 P2.5 retina CCTTTAGTCC (27) 5.3 0.0053 P2.5 retina GTCCTCTTTC (3) 5.3 0.0053 P2.5 retina GAAACTTGGG (13) 1.8 0.0018 P2.5 retina GGGTTTTCCC (4) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CAAATTAAAA (5) 4 0.004 P4.5 retina CCTTTAGTCC (27) 4 0.004 P4.5 retina GGGGTTTTCC (7) 2 0.002 P4.5 retina GGGTTTTCCC (4) 2 0.002 P4.5 retina GTCCTCTTTC (3) 2 0.002 P4.5 retina TGGTTTCTGG (10) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CCTTTAGTCC (27) 3.3 0.0033 P6.5 retina GTCCTCTTTC (3) 3.3 0.0033 P6.5 retina ATTTGAAAAA (2) 1.7 0.0017 P6.5 retina CAAATTAAAA (5) 1.7 0.0017 P6.5 retina GGGGTTTTCC (7) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GTCCTCTTTC (3) 5.6 0.0056 P10.5 crx- retina TGGTTTCTGG (10) 3.7 0.0037 P10.5 crx- retina ACAAAGCTGT (4) 1.9 0.0019 P10.5 crx- retina CCTTTAGTCC (27) 1.9 0.0019 P10.5 crx- retina GGGGTTTTCC (7) 1.9 0.0019 P10.5 crx- retina GGGTTTTCCC (4) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CCTTTAGTCC (27) 5.8 0.0058 P10.5 crx+ retina ATTTGAAAAA (2) 3.8 0.0038 P10.5 crx+ retina GGGGTTTTCC (7) 1.9 0.0019 P10.5 crx+ retina GGGTTTTCCC (4) 1.9 0.0019 P10.5 crx+ retina TGGTTTCTGG (10) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GGGTTTTCCC (4) 5.6 0.0056 Adult retinal ACAAAGCTGT (4) 3.7 0.0037 Adult retinal CCTTTAGTCC (27) 3.7 0.0037 Adult retinal GAAACTTGGG (13) 3.7 0.0037 Adult retinal GAAACCTGGG (8) 1.9 0.0019 Adult retinal GGGGTTTTCC (7) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL CCTTTAGTCC (27) 7.7 0.0077 ONL TGGTTTCTGG (10) 7.7 0.0077 ONL ACAAAGCTGT (4) 3.8 0.0038 ONL GGGGTTTTCC (7) 3.8 0.0038 ONL CAAATTAAAA (5) 1.9 0.0019