Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.152699	1110001M07Rik	RIKEN cDNA 1110001M07 gene	18		68452
Mm.152699	AA407331	expressed sequence AA407331	18		106839
Mm.152699	7120426M23Rik	RIKEN cDNA 7120426M23 gene	18		319898
Mm.152699	Smad2	MAD homolog 2 (Drosophila)	18	18 48.0 cM	17126
Gene Ontology	anterior/posterior pattern formation | cell fate commitment | common-partner SMAD protein phosphorylation | intracellular | mesoderm formation | nucleus | organogenesis | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | SMAD protein heteromerization | transcription factor binding | transcription factor complex | transforming growth factor beta receptor signaling pathway
Human Homolog	SMAD2[SMAD, mothers against DPP homolog 2 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 41 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TATGATCCCG (4) TCCTGGCTCT (5) 3.2 0.0032 Cb medulloblastoma CACAGGTGGC (4) TATGTACATA (2) 4.6 0.0046 P8 GC+1d culture AGCTCAAGGC (5) 1.1 0.0011 P8 GC+SHH+1d culture AGCTCAAGGC (5) CACAGGTGGC (4) GCTGTCAATA (4) TCCTGGCTCT (5) 4.8 0.0048 E15 cortex TAATAATGGC (4) 4.9 0.0049 Hypothalamus CACAGGTGGC (4) GCTGTCAATA (4) TAATAATGGC (4) TATGATCCCG (4) TATGTACATA (2) 10.8 0.0108 E12.5 retina AGCTCAAGGC (5) CACAGGTGGC (4) TATGTACATA (2) 5.7 0.0057 E14.5 retina CACAGGTGGC (4) TAATAATGGC (4) TTTTCCCTTT (2) 7.2 0.0072 E16.5 retina CACAGGTGGC (4) GCTGTCAATA (4) TATGTACATA (2) 9 0.009 P0.5 retina TATGATCCCG (4) 2 0.002 P2.5 retina TAATAATGGC (4) TATGTACATA (2) TCCTGGCTCT (5) 7.1 0.0071 P4.5 retina TAATAATGGC (4) 2 0.002 P6.5 retina AGCTCAAGGC (5) TATGTACATA (2) TTTTCCCTTT (2) 5.1 0.0051 P10.5 crx- retina GCTGTCAATA (4) 1.9 0.0019 P10.5 crx+ retina CACAGGTGGC (4) TATGTACATA (2) 5.7 0.0057 Adult retinal AGCTCAAGGC (5) TATGATCCCG (4) 5.6 0.0056 ONL AGCTCAAGGC (5) GCTGTCAATA (4) TATGTACATA (2) TTTTCCCTTT (2) 7.6 0.0076