Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.152941	Usp16	ubiquitin specific protease 16	16		74112
Gene Ontology	peptidase activity
Human Homolog	USP16[ubiquitin specific protease 16]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 88 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC ATTTTTTTTC (20) 3.3 0.0033 P8 Cb GC CAGATGAGGC (7) 1.6 0.0016 P8 Cb GC TGCAAGCTGT (2) 1.6 0.0016 P8 Cb GC TTTGCACCAA (4) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma ATTTTTTTTC (20) 9.2 0.0092 Cb medulloblastoma GTGTTGCCAG (3) 6.9 0.0069 Cb medulloblastoma GTTTAAAAAA (5) 6.9 0.0069 Cb medulloblastoma TTTACACCAA (3) 4.6 0.0046 Cb medulloblastoma CAGATGAGGC (7) 2.3 0.0023 Cb medulloblastoma GACTCTGCTT (5) 2.3 0.0023 Cb medulloblastoma GGGAAGAAAA (13) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture ATTTTTTTTC (20) 3.4 0.0034 P8 GC+1d culture TTTATTATTT (15) 2.3 0.0023 P8 GC+1d culture TTTGCACCAA (4) 2.3 0.0023 P8 GC+1d culture GTGTTGCCAG (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture ATTTTTTTTC (20) 4.7 0.0047 P8 GC+SHH+1d culture GTTTAAAAAA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGCAAGCTGT (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTATTATTT (15) 1.2 0.0012 P8 GC+SHH+1d culture TTTGCACCAA (4) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts TGCAAGCTGT (2) 3.5 0.0035 3T3 fibroblasts TTTGCACCAA (4) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex ATTTTTTTTC (20) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex ATTTTTTTTC (20) 40.9 0.0409 P1 cortex TTTATTATTT (15) 9.1 0.0091 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TTTATTATTT (15) 7.2 0.0072 Hypothalamus ATTTTTTTTC (20) 1.8 0.0018 Hypothalamus GGGAAGAAAA (13) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina ATTTTTTTTC (20) 9.4 0.0094 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina ATTTTTTTTC (20) 5.5 0.0055 E14.5 retina TTTATTATTT (15) 3.6 0.0036 E14.5 retina GTGTTGCCAG (3) 1.8 0.0018 E14.5 retina GTTTAAAAAA (5) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina ATTTTTTTTC (20) 9.1 0.0091 E16.5 retina TTTACACCAA (3) 3.6 0.0036 E16.5 retina GTGTTGCCAG (3) 1.8 0.0018 E16.5 retina TTTATTATTT (15) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina ATTTTTTTTC (20) 7.3 0.0073 E18.5 retina GTTTAAAAAA (5) 3.6 0.0036 E18.5 retina CAGATGAGGC (7) 1.8 0.0018 E18.5 retina TGCAAGCTGT (2) 1.8 0.0018 E18.5 retina TTTATTATTT (15) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina ATTTTTTTTC (20) 3.9 0.0039 P0.5 retina GACTCTGCTT (5) 2 0.002 P0.5 retina TTTACACCAA (3) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TTTATTATTT (15) 12.3 0.0123 P2.5 retina ATTTTTTTTC (20) 8.8 0.0088 P2.5 retina TTTACACCAA (3) 3.5 0.0035 P2.5 retina GTTTAAAAAA (5) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina TTTATTATTT (15) 5.9 0.0059 P4.5 retina ATTTTTTTTC (20) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina ATTTTTTTTC (20) 6.7 0.0067 P6.5 retina TTTATTATTT (15) 3.3 0.0033 P6.5 retina GTGTTGCCAG (3) 1.7 0.0017 P6.5 retina TTTACACCAA (3) 1.7 0.0017 P6.5 retina TTTGCACCAA (4) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TTTACACCAA (3) 5.6 0.0056 P10.5 crx- retina TTTGCACCAA (4) 3.7 0.0037 P10.5 crx- retina GACTCTGCTT (5) 1.9 0.0019 P10.5 crx- retina GTGTTGCCAG (3) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina ATTTTTTTTC (20) 3.8 0.0038 P10.5 crx+ retina TGCAAGCTGT (2) 1.9 0.0019 P10.5 crx+ retina TTTATTATTT (15) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal ATTTTTTTTC (20) 1.9 0.0019 Adult retinal TTTATTATTT (15) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GACTCTGCTT (5) 3.8 0.0038 ONL ATTTTTTTTC (20) 1.9 0.0019 ONL TTTATTATTT (15) 1.9 0.0019