Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.153014	Gcn1l1	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	5		231659
Human Homolog	GCN1L1[GCN1 general control of amino-acid synthesis 1-like 1 (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGGCTCTGG (7) 9.8 0.0098 P8 Cb GC AGCCTGGAAA (4) 3.3 0.0033 P8 Cb GC ATAGCACAGT (3) 1.6 0.0016 P8 Cb GC CACAACAGCT 1.6 0.0016 P8 Cb GC GAAAATTGTC (5) 1.6 0.0016 P8 Cb GC GGAAGATGGT (4) 1.6 0.0016 Cb medulloblastoma GGGGCTCTGG (7) 11.6 0.0116 Cb medulloblastoma GCACAGCTTG 4.6 0.0046 Cb medulloblastoma AGCCTGGAAA (4) 2.3 0.0023 Cb medulloblastoma ATAGCACAGT (3) 2.3 0.0023 Cb medulloblastoma CCTATAATCC (15) 2.3 0.0023 P8 GC+1d culture GGGGCTCTGG (7) 6.8 0.0068 P8 GC+1d culture GAAAATTGTC (5) 5.7 0.0057 P8 GC+1d culture ATAGCACAGT (3) 4.6 0.0046 P8 GC+1d culture GAAAAATGTT (5) 2.3 0.0023 P8 GC+1d culture CCTATAATCC (15) 1.1 0.0011 P8 GC+1d culture TAGTGACATC (2) 1.1 0.0011 P8 GC+1d culture TCTACTACAG (4) 1.1 0.0011 P8 GC+SHH+1d culture GGGGCTCTGG (7) 11.7 0.0117 P8 GC+SHH+1d culture GAAAATTGTC (5) 7 0.007 P8 GC+SHH+1d culture AGCCTGGAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture ATAGCACAGT (3) 2.3 0.0023 P8 GC+SHH+1d culture CACAACAGCT 2.3 0.0023 P8 GC+SHH+1d culture TCTACTACAG (4) 2.3 0.0023 P8 GC+SHH+1d culture GAAAAATGTT (5) 1.2 0.0012 P8 GC+SHH+1d culture GGAAGATGGT (4) 1.2 0.0012 P8 GC+SHH+1d culture TAGTGACATC (2) 1.2 0.0012 3T3 fibroblasts GGGGCTCTGG (7) 35 0.035 3T3 fibroblasts CCAGCCTTCG (2) 21 0.021 3T3 fibroblasts AGTGACCCCA (3) 10.5 0.0105 3T3 fibroblasts ATAGCACAGT (3) 3.5 0.0035 3T3 fibroblasts TCTACTACAG (4) 3.5 0.0035 E15 cortex GGGGCTCTGG (7) 29.7 0.0297 E15 cortex AGTGACCCCA (3) 9.9 0.0099 E15 cortex GCACAGCTTG 9.9 0.0099 E15 cortex CCTATAATCC (15) 4.9 0.0049 E15 cortex GAAAATTGTC (5) 4.9 0.0049 P1 cortex GAAAAATGTT (5) 9.1 0.0091 P1 cortex GGGGCTCTGG (7) 9.1 0.0091 P1 cortex CCTATAATCC (15) 4.5 0.0045 P1 cortex GAAAATTGTC (5) 4.5 0.0045 Hypothalamus GGGGCTCTGG (7) 10.9 0.0109 Hypothalamus AGCCTGGAAA (4) 3.6 0.0036 Hypothalamus GAAAATTGTC (5) 3.6 0.0036 Hypothalamus ATAGCACAGT (3) 1.8 0.0018 Hypothalamus CCCATTGTCC 1.8 0.0018 Hypothalamus TCTACTACAG (4) 1.8 0.0018 E12.5 retina ATAGCACAGT (3) 15 0.015 E12.5 retina GGGGCTCTGG (7) 5.6 0.0056 E12.5 retina GGAAGATGGT (4) 3.8 0.0038 E12.5 retina TCTACTACAG (4) 1.9 0.0019 E14.5 retina ATAGCACAGT (3) 5.5 0.0055 E14.5 retina AGCCTGGAAA (4) 3.6 0.0036 E14.5 retina GAAAATTGTC (5) 3.6 0.0036 E14.5 retina GGGGCTCTGG (7) 1.8 0.0018 E14.5 retina TCTACTACAG (4) 1.8 0.0018 E16.5 retina TCTACTACAG (4) 5.4 0.0054 E16.5 retina CCTATAATCC (15) 3.6 0.0036 E16.5 retina AGCCTGGAAA (4) 1.8 0.0018 E16.5 retina AGTGACCCCA (3) 1.8 0.0018 E16.5 retina GAAAATTGTC (5) 1.8 0.0018 E16.5 retina GCACAGCTTG 1.8 0.0018 E18.5 retina GGGGCTCTGG (7) 10.9 0.0109 E18.5 retina ATAGCACAGT (3) 1.8 0.0018 E18.5 retina GAAAAATGTT (5) 1.8 0.0018 E18.5 retina GAAAATTGTC (5) 1.8 0.0018 P0.5 retina GGGGCTCTGG (7) 7.9 0.0079 P0.5 retina TCTACTACAG (4) 7.9 0.0079 P0.5 retina ATAGCACAGT (3) 2 0.002 P0.5 retina GCACAGCTTG 2 0.002 P2.5 retina GGGGCTCTGG (7) 7 0.007 P2.5 retina TCTACTACAG (4) 5.3 0.0053 P2.5 retina ATAGCACAGT (3) 3.5 0.0035 P2.5 retina CCTATAATCC (15) 1.8 0.0018 P2.5 retina GAAAATTGTC (5) 1.8 0.0018 P4.5 retina GGGGCTCTGG (7) 9.9 0.0099 P4.5 retina TCTACTACAG (4) 5.9 0.0059 P4.5 retina GGAAGATGGT (4) 4 0.004 P4.5 retina AGCCTGGAAA (4) 2 0.002 P4.5 retina ATAGCACAGT (3) 2 0.002 P6.5 retina GGGGCTCTGG (7) 6.7 0.0067 P6.5 retina TCTACTACAG (4) 5 0.005 P6.5 retina AGCCTGGAAA (4) 1.7 0.0017 P6.5 retina CCTATAATCC (15) 1.7 0.0017 P6.5 retina GAAAATTGTC (5) 1.7 0.0017 P6.5 retina GGAAGATGGT (4) 1.7 0.0017 P6.5 retina TAGTGACATC (2) 1.7 0.0017 P10.5 crx- retina GGGGCTCTGG (7) 9.3 0.0093 P10.5 crx- retina AGCCTGGAAA (4) 5.6 0.0056 P10.5 crx- retina ATAGCACAGT (3) 5.6 0.0056 P10.5 crx- retina GAAAATTGTC (5) 1.9 0.0019 P10.5 crx- retina TCTACTACAG (4) 1.9 0.0019 P10.5 crx+ retina GGGGCTCTGG (7) 17.3 0.0173 P10.5 crx+ retina GAAAAATGTT (5) 3.8 0.0038 P10.5 crx+ retina ATAGCACAGT (3) 1.9 0.0019 P10.5 crx+ retina GCACAGCTTG 1.9 0.0019 P10.5 crx+ retina TCTACTACAG (4) 1.9 0.0019 Adult retinal GGGGCTCTGG (7) 14.8 0.0148 Adult retinal AGCCTGGAAA (4) 5.6 0.0056 Adult retinal ATAGCACAGT (3) 5.6 0.0056 Adult retinal GAAAATTGTC (5) 1.9 0.0019 Adult retinal TAGTGACATC (2) 1.9 0.0019 Adult retinal TCTACTACAG (4) 1.9 0.0019 ONL GGGGCTCTGG (7) 19.2 0.0192 ONL TCTACTACAG (4) 5.7 0.0057 ONL AGCCTGGAAA (4) 3.8 0.0038 ONL CCTATAATCC (15) 3.8 0.0038 ONL GAAAATTGTC (5) 1.9 0.0019