Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.153030
1110019K23Rik
RIKEN cDNA 1110019K23 gene
5
5 E2
68621
Mm.153030
E330024J20Rik
RIKEN cDNA E330024J20 gene
5
320654
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 142 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
GTGGTTCACA (
32
)
14.7
0.0147
P8 Cb GC
GCGACGCGGG
(
6
)
9.8
0.0098
P8 Cb GC
AAAATTACAG
(
3
)
4.9
0.0049
P8 Cb GC
GAAGGGTATT (
5
)
4.9
0.0049
P8 Cb GC
TAATTGTACT
(
2
)
1.6
0.0016
P8 Cb GC
TGAAGAATAC (
5
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GTGGTTCACA (
32
)
11.6
0.0116
Cb medulloblastoma
GAAGGGTATT (
5
)
4.6
0.0046
Cb medulloblastoma
AAAATTACAG
(
3
)
2.3
0.0023
Cb medulloblastoma
GCGACGCGGG
(
6
)
2.3
0.0023
Cb medulloblastoma
GGAGCAGAAA (
10
)
2.3
0.0023
Cb medulloblastoma
TAGAGAAAAC (
3
)
2.3
0.0023
Cb medulloblastoma
TATTTATTTT
(
9
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
GTGGTTCACA (
32
)
18.3
0.0183
P8 GC+1d culture
TGAAGAATAC (
5
)
8
0.008
P8 GC+1d culture
AAAATTACAG
(
3
)
3.4
0.0034
P8 GC+1d culture
ACATTTGAAT
(
2
)
2.3
0.0023
P8 GC+1d culture
GCGACGCGGG
(
6
)
2.3
0.0023
P8 GC+1d culture
GGAGCAGAAA (
10
)
2.3
0.0023
P8 GC+1d culture
CTCTTAATAC (
5
)
1.1
0.0011
P8 GC+1d culture
GAAGGGTATT (
5
)
1.1
0.0011
P8 GC+1d culture
TAATTGTACT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
GTGGTTCACA (
32
)
31.6
0.0316
P8 GC+SHH+1d culture
GCGACGCGGG
(
6
)
15.2
0.0152
P8 GC+SHH+1d culture
TGAAGAATAC (
5
)
5.9
0.0059
P8 GC+SHH+1d culture
AAAATTACAG
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
CTCTTAATAC (
5
)
3.5
0.0035
P8 GC+SHH+1d culture
TAATTGTACT
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
TAGAGAAAAC (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AAAATACAGC (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TAAAGAATAC
(
2
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
GTGGTTCACA (
32
)
17.5
0.0175
3T3 fibroblasts
GCGACGCGGG
(
6
)
7
0.007
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
TGGGCTCTGG (
5
)
9.9
0.0099
E15 cortex
GAAGGGTATT (
5
)
4.9
0.0049
E15 cortex
GTGGTTCACA (
32
)
4.9
0.0049
E15 cortex
GTTACAGGGA (
7
)
4.9
0.0049
E15 cortex
TAGAGAAAAC (
3
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
GTGGTTCACA (
32
)
27.3
0.0273
P1 cortex
GCGACGCGGG
(
6
)
9.1
0.0091
P1 cortex
TGAAGAATAC (
5
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GCGACGCGGG
(
6
)
16.3
0.0163
Hypothalamus
GTGGTTCACA (
32
)
12.7
0.0127
Hypothalamus
GAAGGGTATT (
5
)
3.6
0.0036
Hypothalamus
AAAATTACAG
(
3
)
1.8
0.0018
Hypothalamus
CTCTTAATAC (
5
)
1.8
0.0018
Hypothalamus
TAATTGTACT
(
2
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
GTGGTTCACA (
32
)
28.2
0.0282
E12.5 retina
GCGACGCGGG
(
6
)
7.5
0.0075
E12.5 retina
AAAATTACAG
(
3
)
5.6
0.0056
E12.5 retina
GAAGGGTATT (
5
)
1.9
0.0019
E12.5 retina
TGAAGAATAC (
5
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
GTGGTTCACA (
32
)
51
0.051
E14.5 retina
GCGACGCGGG
(
6
)
5.5
0.0055
E14.5 retina
TGAAGAATAC (
5
)
5.5
0.0055
E14.5 retina
TAATTGTACT
(
2
)
3.6
0.0036
E14.5 retina
AAAATTACAG
(
3
)
1.8
0.0018
E14.5 retina
GAAGGGTATT (
5
)
1.8
0.0018
E14.5 retina
TATTTATTTT
(
9
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GTGGTTCACA (
32
)
39.8
0.0398
E16.5 retina
TGAAGAATAC (
5
)
10.9
0.0109
E16.5 retina
AAAATTACAG
(
3
)
9.1
0.0091
E16.5 retina
AAAATACAGC (
4
)
3.6
0.0036
E16.5 retina
GCGACGCGGG
(
6
)
3.6
0.0036
E16.5 retina
GAAGGGTATT (
5
)
1.8
0.0018
E16.5 retina
GGAGCAGAAA (
10
)
1.8
0.0018
E16.5 retina
TAATTGTACT
(
2
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
GTGGTTCACA (
32
)
40
0.04
E18.5 retina
GCGACGCGGG
(
6
)
16.4
0.0164
E18.5 retina
TGAAGAATAC (
5
)
14.6
0.0146
E18.5 retina
GAAGGGTATT (
5
)
7.3
0.0073
E18.5 retina
AAAATTACAG
(
3
)
5.5
0.0055
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
GTGGTTCACA (
32
)
35.3
0.0353
P0.5 retina
GCGACGCGGG
(
6
)
11.8
0.0118
P0.5 retina
GAAGGGTATT (
5
)
2
0.002
P0.5 retina
TAAAGAATAC
(
2
)
2
0.002
P0.5 retina
TAATTGTACT
(
2
)
2
0.002
P0.5 retina
TGAAGAATAC (
5
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
TGAAGAATAC (
5
)
24.6
0.0246
P2.5 retina
AAAATTACAG
(
3
)
12.3
0.0123
P2.5 retina
GTGGTTCACA (
32
)
12.3
0.0123
P2.5 retina
GCGACGCGGG
(
6
)
7
0.007
P2.5 retina
GAAGGGTATT (
5
)
5.3
0.0053
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
GTGGTTCACA (
32
)
33.7
0.0337
P4.5 retina
TGAAGAATAC (
5
)
27.7
0.0277
P4.5 retina
GCGACGCGGG
(
6
)
15.9
0.0159
P4.5 retina
AAAATTACAG
(
3
)
13.9
0.0139
P4.5 retina
GAAGGGTATT (
5
)
5.9
0.0059
P4.5 retina
TAATTGTACT
(
2
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
GTGGTTCACA (
32
)
25
0.025
P6.5 retina
AAAATTACAG
(
3
)
13.3
0.0133
P6.5 retina
TGAAGAATAC (
5
)
10
0.01
P6.5 retina
GCGACGCGGG
(
6
)
8.3
0.0083
P6.5 retina
GAAGGGTATT (
5
)
3.3
0.0033
P6.5 retina
GGAGCAGAAA (
10
)
1.7
0.0017
P6.5 retina
GTTACAGGGA (
7
)
1.7
0.0017
P6.5 retina
TGGGCTCTGG (
5
)
1.7
0.0017
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GTGGTTCACA (
32
)
20.4
0.0204
P10.5 crx- retina
AAAATTACAG
(
3
)
13
0.013
P10.5 crx- retina
GAAGGGTATT (
5
)
3.7
0.0037
P10.5 crx- retina
TAATTGTACT
(
2
)
3.7
0.0037
P10.5 crx- retina
TGAAGAATAC (
5
)
3.7
0.0037
P10.5 crx- retina
ACATTTGAAT
(
2
)
1.9
0.0019
P10.5 crx- retina
GCGACGCGGG
(
6
)
1.9
0.0019
P10.5 crx- retina
TAGAGAAAAC (
3
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GTGGTTCACA (
32
)
32.7
0.0327
P10.5 crx+ retina
AAAATTACAG
(
3
)
9.6
0.0096
P10.5 crx+ retina
GCGACGCGGG
(
6
)
7.7
0.0077
P10.5 crx+ retina
TGAAGAATAC (
5
)
5.8
0.0058
P10.5 crx+ retina
GAAGGGTATT (
5
)
3.8
0.0038
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
GTGGTTCACA (
32
)
33.3
0.0333
Adult retinal
AAAATACAGC (
4
)
1.9
0.0019
Adult retinal
GCGACGCGGG
(
6
)
1.9
0.0019
Adult retinal
GTTACAGGGA (
7
)
1.9
0.0019
Adult retinal
TATTTATTTT
(
9
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
GTGGTTCACA (
32
)
32.6
0.0326
ONL
GCGACGCGGG
(
6
)
5.7
0.0057
ONL
GTTACAGGGA (
7
)
5.7
0.0057
ONL
TAAAGAATAC
(
2
)
3.8
0.0038
ONL
ACATTTGAAT
(
2
)
1.9
0.0019
ONL
GAAGGGTATT (
5
)
1.9
0.0019
ONL
TGGGCTCTGG (
5
)
1.9
0.0019
