Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.153272
Tgfb1i4
transforming growth factor beta 1 induced transcript 4
14
14 42.0 cM
21807
Mm.153272
D430022A14Rik
RIKEN cDNA D430022A14 gene
14
319691
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 152 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
TTAAAAAAAA (
80
)
13.1
0.0131
P8 Cb GC
AAGGTTGTTT (
4
)
6.5
0.0065
P8 Cb GC
TCCCCCACAC
(
5
)
4.9
0.0049
P8 Cb GC
TCCCCCCCCC (
8
)
3.3
0.0033
P8 Cb GC
CAATTGCAGC
(
2
)
1.6
0.0016
P8 Cb GC
CTGCTGTGGC
(
6
)
1.6
0.0016
P8 Cb GC
CTGTGTTTAC (
3
)
1.6
0.0016
P8 Cb GC
GGACAAGAGA (
6
)
1.6
0.0016
P8 Cb GC
GGCACCACCT (
4
)
1.6
0.0016
P8 Cb GC
GGGTCAAATA (
5
)
1.6
0.0016
P8 Cb GC
GTGGCTTGCA (
6
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
TTAAAAAAAA (
80
)
53.2
0.0532
Cb medulloblastoma
GGCACCACCT (
4
)
4.6
0.0046
Cb medulloblastoma
AAATCCCAAT
(
2
)
2.3
0.0023
Cb medulloblastoma
GCTGGCTACA
(
4
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
TTAAAAAAAA (
80
)
28.5
0.0285
P8 GC+1d culture
CGCAGAACGA
(
3
)
5.7
0.0057
P8 GC+1d culture
TCCCCCACAC
(
5
)
5.7
0.0057
P8 GC+1d culture
TCCCCCCCCC (
8
)
3.4
0.0034
P8 GC+1d culture
AAGGTTGTTT (
4
)
2.3
0.0023
P8 GC+1d culture
CAATTGCAGC
(
2
)
2.3
0.0023
P8 GC+1d culture
AAATCCCAAT
(
2
)
1.1
0.0011
P8 GC+1d culture
GCTGGCTACA
(
4
)
1.1
0.0011
P8 GC+1d culture
GGCACCACCT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
TTAAAAAAAA (
80
)
34
0.034
P8 GC+SHH+1d culture
CGCAGAACGA
(
3
)
5.9
0.0059
P8 GC+SHH+1d culture
AAGGTTGTTT (
4
)
4.7
0.0047
P8 GC+SHH+1d culture
CAATTGCAGC
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
GCTGGCTACA
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AAATCCCAAT
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGGCTTGCA (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TCCCCCACAC
(
5
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
CGCAGAACGA
(
3
)
14
0.014
3T3 fibroblasts
GGCACCACCT (
4
)
3.5
0.0035
3T3 fibroblasts
GTGGCTTGCA (
6
)
3.5
0.0035
3T3 fibroblasts
TCCCCCACAC
(
5
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
TTAAAAAAAA (
80
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
TTAAAAAAAA (
80
)
13.6
0.0136
P1 cortex
CGCAGAACGA
(
3
)
4.5
0.0045
P1 cortex
CTGCTGTGGC
(
6
)
4.5
0.0045
P1 cortex
GTGGCTTGCA (
6
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
TTAAAAAAAA (
80
)
19.9
0.0199
Hypothalamus
CGCAGAACGA
(
3
)
7.2
0.0072
Hypothalamus
TCCCCCACAC
(
5
)
5.4
0.0054
Hypothalamus
AAGGTTGTTT (
4
)
1.8
0.0018
Hypothalamus
CAATTGCAGC
(
2
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
TCCCCCACAC
(
5
)
13.1
0.0131
E12.5 retina
TTAAAAAAAA (
80
)
11.3
0.0113
E12.5 retina
CAATTGCAGC
(
2
)
7.5
0.0075
E12.5 retina
AAGGTTGTTT (
4
)
5.6
0.0056
E12.5 retina
CTGCTGTGGC
(
6
)
3.8
0.0038
E12.5 retina
AAATCCCAAT
(
2
)
1.9
0.0019
E12.5 retina
GGACAAGAGA (
6
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
TCCCCCACAC
(
5
)
16.4
0.0164
E14.5 retina
TTAAAAAAAA (
80
)
16.4
0.0164
E14.5 retina
AAGGTTGTTT (
4
)
7.3
0.0073
E14.5 retina
CGCAGAACGA
(
3
)
5.5
0.0055
E14.5 retina
GGACAAGAGA (
6
)
3.6
0.0036
E14.5 retina
GTGGCTTGCA (
6
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
TTAAAAAAAA (
80
)
16.3
0.0163
E16.5 retina
AAGGTTGTTT (
4
)
14.5
0.0145
E16.5 retina
GGCACCACCT (
4
)
5.4
0.0054
E16.5 retina
TCCCCCACAC
(
5
)
5.4
0.0054
E16.5 retina
CGCAGAACGA
(
3
)
3.6
0.0036
E16.5 retina
CAATTGCAGC
(
2
)
1.8
0.0018
E16.5 retina
GTGGCTTGCA (
6
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
TTAAAAAAAA (
80
)
50.9
0.0509
E18.5 retina
AAGGTTGTTT (
4
)
10.9
0.0109
E18.5 retina
TCCCCCACAC
(
5
)
3.6
0.0036
E18.5 retina
CAATTGCAGC
(
2
)
1.8
0.0018
E18.5 retina
CTGTGTTTAC (
3
)
1.8
0.0018
E18.5 retina
GCCAGCCAGT
(
4
)
1.8
0.0018
E18.5 retina
TCCCCCCCCC (
8
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
TTAAAAAAAA (
80
)
17.7
0.0177
P0.5 retina
CAATTGCAGC
(
2
)
7.9
0.0079
P0.5 retina
AAGGTTGTTT (
4
)
5.9
0.0059
P0.5 retina
TCCCCCACAC
(
5
)
5.9
0.0059
P0.5 retina
CGCAGAACGA
(
3
)
3.9
0.0039
P0.5 retina
GCCAGCCAGT
(
4
)
2
0.002
P0.5 retina
GGGGGGCGGG (
11
)
2
0.002
P0.5 retina
GTGGCTTGCA (
6
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
TTAAAAAAAA (
80
)
40.5
0.0405
P2.5 retina
AAGGTTGTTT (
4
)
8.8
0.0088
P2.5 retina
TCCCCCACAC
(
5
)
8.8
0.0088
P2.5 retina
CAATTGCAGC
(
2
)
1.8
0.0018
P2.5 retina
GGCACCACCT (
4
)
1.8
0.0018
P2.5 retina
GTGGCTTGCA (
6
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
TTAAAAAAAA (
80
)
47.6
0.0476
P4.5 retina
TCCCCCACAC
(
5
)
9.9
0.0099
P4.5 retina
AAGGTTGTTT (
4
)
4
0.004
P4.5 retina
CAATTGCAGC
(
2
)
4
0.004
P4.5 retina
GTGGCTTGCA (
6
)
4
0.004
P4.5 retina
CGCAGAACGA
(
3
)
2
0.002
P4.5 retina
CTGTGTTTAC (
3
)
2
0.002
P4.5 retina
GGACAAGAGA (
6
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
TCCCCCACAC
(
5
)
20
0.02
P6.5 retina
TTAAAAAAAA (
80
)
16.7
0.0167
P6.5 retina
CAATTGCAGC
(
2
)
5
0.005
P6.5 retina
AAGGTTGTTT (
4
)
3.3
0.0033
P6.5 retina
GTGGCTTGCA (
6
)
3.3
0.0033
P6.5 retina
AAATCCCAAT
(
2
)
1.7
0.0017
P6.5 retina
CGCAGAACGA
(
3
)
1.7
0.0017
P6.5 retina
CTGTGTTTAC (
3
)
1.7
0.0017
P6.5 retina
GGCACCACCT (
4
)
1.7
0.0017
P6.5 retina
GGGGGGCGGG (
11
)
1.7
0.0017
P6.5 retina
GGGTCAAATA (
5
)
1.7
0.0017
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
TTAAAAAAAA (
80
)
13
0.013
P10.5 crx- retina
TCCCCCACAC
(
5
)
11.1
0.0111
P10.5 crx- retina
CGCAGAACGA
(
3
)
3.7
0.0037
P10.5 crx- retina
AAATCCCAAT
(
2
)
1.9
0.0019
P10.5 crx- retina
AAGGTTGTTT (
4
)
1.9
0.0019
P10.5 crx- retina
CAATTGCAGC
(
2
)
1.9
0.0019
P10.5 crx- retina
CTGCTGTGGC
(
6
)
1.9
0.0019
P10.5 crx- retina
GGACAAGAGA (
6
)
1.9
0.0019
P10.5 crx- retina
GGGTCAAATA (
5
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
TCCCCCACAC
(
5
)
19.2
0.0192
P10.5 crx+ retina
CAATTGCAGC
(
2
)
9.6
0.0096
P10.5 crx+ retina
TTAAAAAAAA (
80
)
5.8
0.0058
P10.5 crx+ retina
AAATCCCAAT
(
2
)
3.8
0.0038
P10.5 crx+ retina
AAGGTTGTTT (
4
)
3.8
0.0038
P10.5 crx+ retina
CGCAGAACGA
(
3
)
3.8
0.0038
P10.5 crx+ retina
CTGTGTTTAC (
3
)
1.9
0.0019
P10.5 crx+ retina
GGACAAGAGA (
6
)
1.9
0.0019
P10.5 crx+ retina
GGGGGGCGGG (
11
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
TCCCCCACAC
(
5
)
7.4
0.0074
Adult retinal
TTAAAAAAAA (
80
)
7.4
0.0074
Adult retinal
CTGTGTTTAC (
3
)
3.7
0.0037
Adult retinal
GCCAGCCAGT
(
4
)
3.7
0.0037
Adult retinal
CGCAGAACGA
(
3
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
TTAAAAAAAA (
80
)
7.7
0.0077
ONL
AAGGTTGTTT (
4
)
3.8
0.0038
ONL
GTGGCTTGCA (
6
)
3.8
0.0038
