Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.156506	Pcdh21	protocadherin 21	14	14 B	170677
Gene Ontology	calcium ion binding | cell growth and/or maintenance | extracellular space | homophilic cell adhesion | integral to membrane | integral to plasma membrane | membrane | receptor activity
Human Homolog	PCDH21[protocadherin 21]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 29 In Situ Hybridization Images

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SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTGCCCTTC (5) 3.3 0.0033 P8 Cb GC GTGACTCCCA (4) 3.3 0.0033 P8 Cb GC AGTAGTCCCC 1.6 0.0016 Cb medulloblastoma GCTGCCCTTC (5) 2.3 0.0023 Cb medulloblastoma GTGACTCCCA (4) 2.3 0.0023 P8 GC+1d culture GTGACTCCCA (4) 9.1 0.0091 P8 GC+1d culture GCTGCCCTTC (5) 2.3 0.0023 P8 GC+1d culture AGTAGTCCCC 1.1 0.0011 P8 GC+SHH+1d culture GTGACTCCCA (4) 9.4 0.0094 P8 GC+SHH+1d culture AGTAGTCCCC 1.2 0.0012 3T3 fibroblasts GTGACTCCCA (4) 7 0.007 3T3 fibroblasts GCTGCCCTTC (5) 3.5 0.0035 E15 cortex GTGACTCCCA (4) 4.9 0.0049 P1 cortex GCTGCCCTTC (5) 18.2 0.0182 P1 cortex GTGACTCCCA (4) 9.1 0.0091 Hypothalamus GCTGCCCTTC (5) 9.1 0.0091 Hypothalamus GTGACTCCCA (4) 7.2 0.0072 Hypothalamus CTGTTAACCT (2) 1.8 0.0018 E12.5 retina GCTGCCCTTC (5) 9.4 0.0094 E12.5 retina CTGTTAACCT (2) 3.8 0.0038 E12.5 retina GTGACTCCCA (4) 3.8 0.0038 E14.5 retina GCTGCCCTTC (5) 5.5 0.0055 E14.5 retina CTGTTAACCT (2) 1.8 0.0018 E16.5 retina GTGACTCCCA (4) 9.1 0.0091 E16.5 retina CTGTTAACCT (2) 5.4 0.0054 E16.5 retina TTCATACAAT 1.8 0.0018 E18.5 retina CTGTTAACCT (2) 12.7 0.0127 E18.5 retina GTGACTCCCA (4) 5.5 0.0055 P0.5 retina GCTGCCCTTC (5) 15.7 0.0157 P0.5 retina CTGTTAACCT (2) 5.9 0.0059 P0.5 retina GTGACTCCCA (4) 5.9 0.0059 P0.5 retina AGTAGTCCCC 2 0.002 P2.5 retina CTGTTAACCT (2) 17.6 0.0176 P2.5 retina GCTGCCCTTC (5) 10.6 0.0106 P2.5 retina GTGACTCCCA (4) 10.6 0.0106 P4.5 retina CTGTTAACCT (2) 51.5 0.0515 P4.5 retina GCTGCCCTTC (5) 4 0.004 P4.5 retina TTCATACAAT 2 0.002 P6.5 retina CTGTTAACCT (2) 93.4 0.0934 P6.5 retina GCTGCCCTTC (5) 10 0.01 P6.5 retina GTGACTCCCA (4) 8.3 0.0083 P6.5 retina AGTAGTCCCC 1.7 0.0017 P6.5 retina TTCATACAAT 1.7 0.0017 P10.5 crx- retina CTGTTAACCT (2) 65 0.065 P10.5 crx- retina GTGACTCCCA (4) 3.7 0.0037 P10.5 crx- retina TTCATACAAT 1.9 0.0019 P10.5 crx+ retina CTGTTAACCT (2) 96.1 0.0961 P10.5 crx+ retina GTGACTCCCA (4) 5.8 0.0058 P10.5 crx+ retina TTCATACAAT 3.8 0.0038 P10.5 crx+ retina GCTGCCCTTC (5) 1.9 0.0019 Adult retinal CTGTTAACCT (2) 46.3 0.0463 Adult retinal GCTGCCCTTC (5) 18.5 0.0185 Adult retinal TTCATACAAT 3.7 0.0037 Adult retinal AGTAGTCCCC 1.9 0.0019 Adult retinal CAGTGAATTG 1.9 0.0019 Adult retinal GTGACTCCCA (4) 1.9 0.0019 ONL CTGTTAACCT (2) 93.9 0.0939 ONL CAGTGAATTG 5.7 0.0057 ONL GCTGCCCTTC (5) 5.7 0.0057 ONL GTGACTCCCA (4) 5.7 0.0057