Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.15701	Trim28	tripartite motif protein 28	7		21849
Gene Ontology	chromatin | DNA binding | intracellular | negative regulation of transcription from Pol II promoter | nucleus | protein binding | protein ubiquitination | regulation of transcription, DNA-dependent | transcriptional repressor activity | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRIM28[tripartite motif-containing 28]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 171 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC AATAAAAACT (2) 26.1 0.0261 P8 Cb GC TCTGGCAGTC (3) 11.4 0.0114 P8 Cb GC AATGATGCCT (2) 9.8 0.0098 P8 Cb GC GCCCTGGTGC (4) 9.8 0.0098 P8 Cb GC GCTCCTCCAA (8) 8.2 0.0082 P8 Cb GC GAGCAGCGTG 4.9 0.0049 P8 Cb GC CCTCAAAAAA (12) 3.3 0.0033 P8 Cb GC AAGGAGCTGA (4) 1.6 0.0016 P8 Cb GC GCATTGTCAA (2) 1.6 0.0016 P8 Cb GC TATGAAAGAA (5) 1.6 0.0016 P8 Cb GC TGGCCACCAT (2) 1.6 0.0016 P8 Cb GC TTATGTGTAA (4) 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma GCCCTGGTGC (4) 53.2 0.0532 Cb medulloblastoma AATAAAAACT (2) 32.4 0.0324 Cb medulloblastoma GAGCAGCGTG 9.2 0.0092 Cb medulloblastoma TTATGTGTAA (4) 6.9 0.0069 Cb medulloblastoma TCTGGCAGTC (3) 4.6 0.0046 Cb medulloblastoma GCTCCTCCAA (8) 2.3 0.0023 Cb medulloblastoma TGGCCACCAT (2) 2.3 0.0023 P8 GC+1d culture GCCCTGGTGC (4) 46.8 0.0468 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture AATAAAAACT (2) 22.8 0.0228 P8 GC+1d culture GAGCAGCGTG 18.3 0.0183 P8 GC+1d culture AATGATGCCT (2) 6.8 0.0068 P8 GC+1d culture GTATGGGGTG (3) 2.3 0.0023 P8 GC+1d culture CATTTGCTCA (3) 1.1 0.0011 P8 GC+1d culture TATGAAAGAA (5) 1.1 0.0011 P8 GC+1d culture TTATGTGTAA (4) 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture GCCCTGGTGC (4) 45.7 0.0457 P8 GC+SHH+1d culture AATAAAAACT (2) 34 0.034 P8 GC+SHH+1d culture TCTGGCAGTC (3) 12.9 0.0129 P8 GC+SHH+1d culture AATGATGCCT (2) 11.7 0.0117 P8 GC+SHH+1d culture GAGCAGCGTG 5.9 0.0059 P8 GC+SHH+1d culture GTATGGGGTG (3) 4.7 0.0047 P8 GC+SHH+1d culture CCTCAAAAAA (12) 2.3 0.0023 P8 GC+SHH+1d culture TGGCCACCAT (2) 2.3 0.0023 P8 GC+SHH+1d culture TTATGTGTAA (4) 2.3 0.0023 P8 GC+SHH+1d culture CATTTGCTCA (3) 1.2 0.0012 P8 GC+SHH+1d culture CGGCCCACAT 1.2 0.0012 P8 GC+SHH+1d culture TATGAAAGAA (5) 1.2 0.0012 3T3 fibroblasts TCTGGCAGTC (3) 10.5 0.0105 3T3 fibroblasts AATGATGCCT (2) 7 0.007 3T3 fibroblasts ATGCCAGAGG (5) 7 0.007 3T3 fibroblasts GAGCAGCGTG 3.5 0.0035 3T3 fibroblasts GCCCTGGTGC (4) 3.5 0.0035 3T3 fibroblasts GTATGGGGTG (3) 3.5 0.0035 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex GCCCTGGTGC (4) 19.8 0.0198 E15 cortex TCTGGCAGTC (3) 19.8 0.0198 E15 cortex GAGCAGCGTG 14.8 0.0148 E15 cortex AATAAAAACT (2) 9.9 0.0099 E15 cortex GAGCAGCCTG (3) 4.9 0.0049 E15 cortex GGACCCCAAT (2) 4.9 0.0049 E15 cortex GTATGGGGTG (3) 4.9 0.0049 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex AATGATGCCT (2) 18.2 0.0182 P1 cortex AATAAAAACT (2) 13.6 0.0136 P1 cortex TCTGGCAGTC (3) 9.1 0.0091 P1 cortex GAGCAGCGTG 4.5 0.0045 P1 cortex GCATTGTCAA (2) 4.5 0.0045 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus AATAAAAACT (2) 21.7 0.0217 Hypothalamus GCCCTGGTGC (4) 19.9 0.0199 Hypothalamus CGGCCCACAT 1.8 0.0018 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina TCTGGCAGTC (3) 18.8 0.0188 E12.5 retina AATGATGCCT (2) 15 0.015 E12.5 retina GCCCTGGTGC (4) 13.1 0.0131 E12.5 retina AATAAAAACT (2) 9.4 0.0094 E12.5 retina CCTCAAAAAA (12) 5.6 0.0056 E12.5 retina GAGCAGCGTG 3.8 0.0038 E12.5 retina GTATGGGGTG (3) 3.8 0.0038 E14.5 retina AATAAAAACT (2) 25.5 0.0255 E14.5 retina GCCCTGGTGC (4) 12.8 0.0128 E14.5 retina AATGATGCCT (2) 10.9 0.0109 E14.5 retina TCTGGCAGTC (3) 10.9 0.0109 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina GAGCAGCGTG 7.3 0.0073 E14.5 retina TATGAAAGAA (5) 7.3 0.0073 E14.5 retina CGGCCCACAT 1.8 0.0018 E14.5 retina TTATGTGTAA (4) 1.8 0.0018 E16.5 retina AATAAAAACT (2) 25.4 0.0254 E16.5 retina GCCCTGGTGC (4) 18.1 0.0181 E16.5 retina AATGATGCCT (2) 14.5 0.0145 E16.5 retina GAGCAGCGTG 10.9 0.0109 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina ATCAAGAAGC (2) 7.2 0.0072 E16.5 retina TCTGGCAGTC (3) 5.4 0.0054 E16.5 retina AAGGAGCTGA (4) 1.8 0.0018 E16.5 retina CCTCAAAAAA (12) 1.8 0.0018 E16.5 retina TATGAAAGAA (5) 1.8 0.0018 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina AATAAAAACT (2) 36.4 0.0364 E18.5 retina GCCCTGGTGC (4) 21.8 0.0218 E18.5 retina TCTGGCAGTC (3) 10.9 0.0109 E18.5 retina GAGCAGCGTG 5.5 0.0055 E18.5 retina AATGATGCCT (2) 1.8 0.0018 E18.5 retina CGGCCCACAT 1.8 0.0018 E18.5 retina TATGAAAGAA (5) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina GCCCTGGTGC (4) 37.3 0.0373 P0.5 retina AATGATGCCT (2) 23.6 0.0236 P0.5 retina GAGCAGCGTG 17.7 0.0177 P0.5 retina AATAAAAACT (2) 11.8 0.0118 P0.5 retina TCTGGCAGTC (3) 11.8 0.0118 P0.5 retina AAGGAGCTGA (4) 2 0.002 P0.5 retina CATTTGCTCA (3) 2 0.002 P0.5 retina CGGCCCACAT 2 0.002 P0.5 retina TATGAAAGAA (5) 2 0.002 P0.5 retina TTATGTGTAA (4) 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina GCCCTGGTGC (4) 37 0.037 P2.5 retina AATAAAAACT (2) 26.4 0.0264 P2.5 retina TCTGGCAGTC (3) 10.6 0.0106 P2.5 retina GAGCAGCGTG 8.8 0.0088 P2.5 retina AATGATGCCT (2) 7 0.007 P2.5 retina TTATGTGTAA (4) 5.3 0.0053 P2.5 retina CCTCAAAAAA (12) 3.5 0.0035 P2.5 retina GTATGGGGTG (3) 3.5 0.0035 P4.5 retina GCCCTGGTGC (4) 49.5 0.0495 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina AATAAAAACT (2) 39.6 0.0396 P4.5 retina AATGATGCCT (2) 9.9 0.0099 P4.5 retina GAGCAGCGTG 4 0.004 P4.5 retina CCTCAAAAAA (12) 2 0.002 P4.5 retina TATGAAAGAA (5) 2 0.002 P4.5 retina TCTGGCAGTC (3) 2 0.002 P6.5 retina GCCCTGGTGC (4) 50 0.05 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina AATAAAAACT (2) 23.3 0.0233 P6.5 retina GAGCAGCGTG 11.7 0.0117 P6.5 retina AATGATGCCT (2) 3.3 0.0033 P6.5 retina GTATGGGGTG (3) 3.3 0.0033 P6.5 retina TCTGGCAGTC (3) 3.3 0.0033 P6.5 retina CCTCAAAAAA (12) 1.7 0.0017 P10.5 crx- retina GCCCTGGTGC (4) 42.7 0.0427 P10.5 crx- retina GAGCAGCGTG 18.6 0.0186 P10.5 crx- retina AATAAAAACT (2) 14.9 0.0149 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina AATGATGCCT (2) 5.6 0.0056 P10.5 crx- retina TCTGGCAGTC (3) 5.6 0.0056 P10.5 crx- retina CATTTGCTCA (3) 1.9 0.0019 P10.5 crx- retina GAGCAGCCTG (3) 1.9 0.0019 P10.5 crx- retina TTATGTGTAA (4) 1.9 0.0019 P10.5 crx+ retina GCCCTGGTGC (4) 34.6 0.0346 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina AATAAAAACT (2) 19.2 0.0192 P10.5 crx+ retina TCTGGCAGTC (3) 17.3 0.0173 P10.5 crx+ retina AATGATGCCT (2) 9.6 0.0096 P10.5 crx+ retina GAGCAGCGTG 5.8 0.0058 P10.5 crx+ retina GTATGGGGTG (3) 3.8 0.0038 P10.5 crx+ retina ATGCCAGAGG (5) 1.9 0.0019 P10.5 crx+ retina CCTCAAAAAA (12) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GCCCTGGTGC (4) 16.7 0.0167 Adult retinal GAGCAGCGTG 9.3 0.0093 Adult retinal AATAAAAACT (2) 5.6 0.0056 Adult retinal AATGATGCCT (2) 5.6 0.0056 Adult retinal ATCAAGAAGC (2) 1.9 0.0019 Adult retinal GAGCAGCCTG (3) 1.9 0.0019 Adult retinal GCATTGTCAA (2) 1.9 0.0019 Adult retinal TCTGGCAGTC (3) 1.9 0.0019 ONL GCCCTGGTGC (4) 28.7 0.0287 ONL AATAAAAACT (2) 21.1 0.0211 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL GGACCCCAAT (2) 3.8 0.0038 ONL TCTGGCAGTC (3) 3.8 0.0038 ONL CCTCAAAAAA (12) 1.9 0.0019