Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.15701	Trim28	tripartite motif protein 28	7		21849
Gene Ontology	chromatin | DNA binding | intracellular | negative regulation of transcription from Pol II promoter | nucleus | protein binding | protein ubiquitination | regulation of transcription, DNA-dependent | transcriptional repressor activity | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRIM28[tripartite motif-containing 28]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 171 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGAGCTGA AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCATTGTCAA GCCCTGGTGC (2) GCTCCTCCAA (3) TATGAAAGAA (3) TCTGGCAGTC (3) TGGCCACCAT TTATGTGTAA (3) 128.8 0.1288 Cb medulloblastoma AATAAAAACT CAAAAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) GCTCCTCCAA (3) TCTGGCAGTC (3) TGGCCACCAT TTATGTGTAA (3) 203.4 0.2034 P8 GC+1d culture AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CATTTGCTCA (2) GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TATGAAAGAA (3) TTATGTGTAA (3) 138 0.138 P8 GC+SHH+1d culture AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CATTTGCTCA (2) CCTCAAAAAA (2) CGGCCCACAT GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TATGAAAGAA (3) TCTGGCAGTC (3) TGGCCACCAT TTATGTGTAA (3) 183.9 0.1839 3T3 fibroblasts AATGATGCCT ATGCCAGAGG (2) GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TCTGGCAGTC (3) 35 0.035 E15 cortex AATAAAAACT CAAAAAAAAA (2) GAGCAGCCTG (2) GAGCAGCGTG GCCCTGGTGC (2) GGACCCCAAT GTATGGGGTG TCTGGCAGTC (3) 113.6 0.1136 P1 cortex AATAAAAACT AATGATGCCT CAAAAAAAAA (2) GAGCAGCGTG GCATTGTCAA TCTGGCAGTC (3) 72.6 0.0726 Hypothalamus AATAAAAACT CAAAAAAAAA (2) CGGCCCACAT GCCCTGGTGC (2) 83.2 0.0832 E12.5 retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TCTGGCAGTC (3) 92 0.092 E14.5 retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CGGCCCACAT GAGCAGCGTG GCCCTGGTGC (2) TATGAAAGAA (3) TCTGGCAGTC (3) TTATGTGTAA (3) 87.4 0.0874 E16.5 retina AAGGAGCTGA AATAAAAACT AATGATGCCT ATCAAGAAGC CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) TATGAAAGAA (3) TCTGGCAGTC (3) 96 0.096 E18.5 retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CGGCCCACAT GAGCAGCGTG GCCCTGGTGC (2) TATGAAAGAA (3) TCTGGCAGTC (3) 121.8 0.1218 P0.5 retina AAGGAGCTGA AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CATTTGCTCA (2) CGGCCCACAT GAGCAGCGTG GCCCTGGTGC (2) TATGAAAGAA (3) TCTGGCAGTC (3) TTATGTGTAA (3) 249.6 0.2496 P2.5 retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TCTGGCAGTC (3) TTATGTGTAA (3) 154.9 0.1549 P4.5 retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) TATGAAAGAA (3) TCTGGCAGTC (3) 150.6 0.1506 P6.5 retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TCTGGCAGTC (3) 128.3 0.1283 P10.5 crx- retina AATAAAAACT AATGATGCCT CAAAAAAAAA (2) CATTTGCTCA (2) GAGCAGCCTG (2) GAGCAGCGTG GCCCTGGTGC (2) TCTGGCAGTC (3) TTATGTGTAA (3) 106.1 0.1061 P10.5 crx+ retina AATAAAAACT AATGATGCCT ATGCCAGAGG (2) CAAAAAAAAA (2) CCTCAAAAAA (2) GAGCAGCGTG GCCCTGGTGC (2) GTATGGGGTG TCTGGCAGTC (3) 126.8 0.1268 Adult retinal AATAAAAACT AATGATGCCT ATCAAGAAGC CAAAAAAAAA (2) GAGCAGCCTG (2) GAGCAGCGTG GCATTGTCAA GCCCTGGTGC (2) TCTGGCAGTC (3) 65.2 0.0652 ONL AATAAAAACT CAAAAAAAAA (2) CCTCAAAAAA (2) GCCCTGGTGC (2) GGACCCCAAT TCTGGCAGTC (3) 76.5 0.0765