Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.158264
Pfdn5
prefoldin 5
15
15 61.7 cM
56612
Mm.158264
1700010A06Rik
RIKEN cDNA 1700010A06 gene
15
69335
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 119 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAGGTGAGCG (
5
)
50.6
0.0506
P8 Cb GC
GAAATGATGA
(
4
)
27.7
0.0277
P8 Cb GC
GCCTCCTGGG
(
10
)
4.9
0.0049
P8 Cb GC
TTTTTTTTTT (
433
)
4.9
0.0049
P8 Cb GC
GGGGCAGCCC (
5
)
3.3
0.0033
P8 Cb GC
AAGCAGGCTG
(
4
)
1.6
0.0016
P8 Cb GC
GGGAGAGAGT (
2
)
1.6
0.0016
Cb medulloblastoma
GAAATGATGA
(
4
)
11.6
0.0116
Cb medulloblastoma
CAGGTGAGCG (
5
)
9.2
0.0092
Cb medulloblastoma
CTCCACATCG
(
2
)
2.3
0.0023
Cb medulloblastoma
TGCTTATTGA
(
2
)
2.3
0.0023
Cb medulloblastoma
TTTTTTTTTT (
433
)
2.3
0.0023
P8 GC+1d culture
CAGGTGAGCG (
5
)
43.4
0.0434
P8 GC+1d culture
GGGGCAGCCC (
5
)
19.4
0.0194
P8 GC+1d culture
GAAATGATGA
(
4
)
18.3
0.0183
P8 GC+1d culture
TTTTTTTTTT (
433
)
13.7
0.0137
P8 GC+1d culture
GCCTCCTGGG
(
10
)
9.1
0.0091
P8 GC+1d culture
GGGAGAGAGT (
2
)
2.3
0.0023
P8 GC+SHH+1d culture
CAGGTGAGCG (
5
)
42.2
0.0422
P8 GC+SHH+1d culture
GGGGCAGCCC (
5
)
10.5
0.0105
P8 GC+SHH+1d culture
GCCTCCTGGG
(
10
)
8.2
0.0082
P8 GC+SHH+1d culture
GAAATGATGA
(
4
)
5.9
0.0059
P8 GC+SHH+1d culture
TTTTTTTTTT (
433
)
5.9
0.0059
P8 GC+SHH+1d culture
CTCCACATCG
(
2
)
1.2
0.0012
3T3 fibroblasts
CAGGTGAGCG (
5
)
42.1
0.0421
3T3 fibroblasts
GAAATGATGA
(
4
)
7
0.007
3T3 fibroblasts
GCCTCCTGGG
(
10
)
3.5
0.0035
3T3 fibroblasts
GGGGCAGCCC (
5
)
3.5
0.0035
E15 cortex
GGGGCAGCCC (
5
)
29.7
0.0297
E15 cortex
CAGGTGAGCG (
5
)
24.7
0.0247
E15 cortex
GAAATGAAGA (
7
)
4.9
0.0049
E15 cortex
GAAATGATGA
(
4
)
4.9
0.0049
E15 cortex
GCCTCCTGGG
(
10
)
4.9
0.0049
E15 cortex
TTTTTTTTTT (
433
)
4.9
0.0049
P1 cortex
GAAATGATGA
(
4
)
18.2
0.0182
P1 cortex
GGGGCAGCCC (
5
)
9.1
0.0091
P1 cortex
CAGGTGAGCG (
5
)
4.5
0.0045
P1 cortex
GAAATGAAGA (
7
)
4.5
0.0045
P1 cortex
TTTTTTTTTT (
433
)
4.5
0.0045
Hypothalamus
GAAATGATGA
(
4
)
18.1
0.0181
Hypothalamus
GGGGCAGCCC (
5
)
16.3
0.0163
Hypothalamus
CAGGTGAGCG (
5
)
9.1
0.0091
Hypothalamus
TTTTTTTTTT (
433
)
7.2
0.0072
Hypothalamus
CTCCACATCG
(
2
)
3.6
0.0036
Hypothalamus
GGGAGAGAGT (
2
)
1.8
0.0018
E12.5 retina
CAGGTGAGCG (
5
)
35.7
0.0357
E12.5 retina
GAAATGATGA
(
4
)
22.5
0.0225
E12.5 retina
GCCTCCTGGG
(
10
)
11.3
0.0113
E12.5 retina
TTTTTTTTTT (
433
)
7.5
0.0075
E12.5 retina
GAAATGAAGA (
7
)
1.9
0.0019
E14.5 retina
TTTTTTTTTT (
433
)
23.7
0.0237
E14.5 retina
CAGGTGAGCG (
5
)
18.2
0.0182
E14.5 retina
GCCTCCTGGG
(
10
)
10.9
0.0109
E14.5 retina
GGGAGAGAGT (
2
)
3.6
0.0036
E14.5 retina
AAACAAGCTG (
5
)
1.8
0.0018
E14.5 retina
CTCCACATCG
(
2
)
1.8
0.0018
E14.5 retina
GGGGCAGCCC (
5
)
1.8
0.0018
E16.5 retina
CAGGTGAGCG (
5
)
21.7
0.0217
E16.5 retina
GAAATGATGA
(
4
)
9.1
0.0091
E16.5 retina
GCCTCCTGGG
(
10
)
7.2
0.0072
E16.5 retina
GGGAGAGAGT (
2
)
5.4
0.0054
E16.5 retina
TTTTTTTTTT (
433
)
5.4
0.0054
E16.5 retina
GGGGCAGCCC (
5
)
3.6
0.0036
E16.5 retina
CTCCACATCG
(
2
)
1.8
0.0018
E16.5 retina
TGCTTATTGA
(
2
)
1.8
0.0018
E18.5 retina
CAGGTGAGCG (
5
)
12.7
0.0127
E18.5 retina
TTTTTTTTTT (
433
)
10.9
0.0109
E18.5 retina
GAAATGATGA
(
4
)
7.3
0.0073
E18.5 retina
GGGGCAGCCC (
5
)
7.3
0.0073
E18.5 retina
GGGAGAGAGT (
2
)
1.8
0.0018
P0.5 retina
CAGGTGAGCG (
5
)
47.1
0.0471
P0.5 retina
GAAATGATGA
(
4
)
23.6
0.0236
P0.5 retina
TTTTTTTTTT (
433
)
9.8
0.0098
P0.5 retina
GGGGCAGCCC (
5
)
5.9
0.0059
P0.5 retina
GCCTCCTGGG
(
10
)
3.9
0.0039
P0.5 retina
AAACAAGCTG (
5
)
2
0.002
P0.5 retina
CTCCACATCG
(
2
)
2
0.002
P2.5 retina
CAGGTGAGCG (
5
)
14.1
0.0141
P2.5 retina
GAAATGATGA
(
4
)
8.8
0.0088
P2.5 retina
TTTTTTTTTT (
433
)
7
0.007
P2.5 retina
GGGGCAGCCC (
5
)
5.3
0.0053
P2.5 retina
GCCTCCTGGG
(
10
)
1.8
0.0018
P2.5 retina
GGGAGAGAGT (
2
)
1.8
0.0018
P4.5 retina
CAGGTGAGCG (
5
)
13.9
0.0139
P4.5 retina
GAAATGATGA
(
4
)
13.9
0.0139
P4.5 retina
TTTTTTTTTT (
433
)
9.9
0.0099
P4.5 retina
GGGGCAGCCC (
5
)
7.9
0.0079
P4.5 retina
GGGAGAGAGT (
2
)
2
0.002
P6.5 retina
GAAATGATGA
(
4
)
13.3
0.0133
P6.5 retina
GGGGCAGCCC (
5
)
11.7
0.0117
P6.5 retina
CAGGTGAGCG (
5
)
10
0.01
P6.5 retina
TTTTTTTTTT (
433
)
8.3
0.0083
P6.5 retina
GCCTCCTGGG
(
10
)
5
0.005
P6.5 retina
GGGAGAGAGT (
2
)
3.3
0.0033
P10.5 crx- retina
GAAATGATGA
(
4
)
48.3
0.0483
P10.5 crx- retina
CAGGTGAGCG (
5
)
42.7
0.0427
P10.5 crx- retina
GCCTCCTGGG
(
10
)
11.1
0.0111
P10.5 crx- retina
GGGGCAGCCC (
5
)
9.3
0.0093
P10.5 crx- retina
TGCTTATTGA
(
2
)
1.9
0.0019
P10.5 crx+ retina
CAGGTGAGCG (
5
)
19.2
0.0192
P10.5 crx+ retina
GAAATGATGA
(
4
)
13.5
0.0135
P10.5 crx+ retina
GCCTCCTGGG
(
10
)
5.8
0.0058
P10.5 crx+ retina
TTTTTTTTTT (
433
)
3.8
0.0038
P10.5 crx+ retina
CTCCACATCG
(
2
)
1.9
0.0019
P10.5 crx+ retina
GAAATGAAGA (
7
)
1.9
0.0019
P10.5 crx+ retina
GGGGCAGCCC (
5
)
1.9
0.0019
Adult retinal
GAAATGATGA
(
4
)
20.4
0.0204
Adult retinal
CAGGTGAGCG (
5
)
11.1
0.0111
Adult retinal
GGGGCAGCCC (
5
)
9.3
0.0093
Adult retinal
TTTTTTTTTT (
433
)
7.4
0.0074
Adult retinal
GCCTCCTGGG
(
10
)
5.6
0.0056
Adult retinal
AAACAAGCTG (
5
)
1.9
0.0019
Adult retinal
TGCTTATTGA
(
2
)
1.9
0.0019
ONL
GAAATGATGA
(
4
)
28.7
0.0287
ONL
CAGGTGAGCG (
5
)
7.7
0.0077
ONL
AAGCAGGCTG
(
4
)
3.8
0.0038
ONL
TTTTTTTTTT (
433
)
3.8
0.0038
ONL
AAACAAGCTG (
5
)
1.9
0.0019
ONL
GCCTCCTGGG
(
10
)
1.9
0.0019
