Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.15868	Vdp	vesicle docking protein	5		56041
Gene Ontology	cytoplasm | Golgi apparatus | intracellular protein transport | membrane | protein transport | protein transporter activity | transport
Human Homolog	VDP[vesicle docking protein p115]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCTTAGTTT (3) 4.9 0.0049 P8 Cb GC TTTATTTCCT 3.3 0.0033 P8 Cb GC TGACACTTTA (8) 1.6 0.0016 Cb medulloblastoma TGACACTTTA (8) 6.9 0.0069 Cb medulloblastoma TTCTTAGTTT (3) 6.9 0.0069 P8 GC+1d culture TTCTTAGTTT (3) 5.7 0.0057 P8 GC+1d culture TGAGTGCTGC (4) 2.3 0.0023 P8 GC+1d culture AAAGTAATCA (3) 1.1 0.0011 P8 GC+1d culture TGACACTTTA (8) 1.1 0.0011 P8 GC+SHH+1d culture TGACACTTTA (8) 7 0.007 P8 GC+SHH+1d culture TTCTTAGTTT (3) 2.3 0.0023 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex GTCATAGCTG (590) 4.9 0.0049 Hypothalamus AAAGTAATCA (3) 3.6 0.0036 Hypothalamus TGACACTTTA (8) 1.8 0.0018 Hypothalamus TGGTCACCTG (7) 1.8 0.0018 E12.5 retina TGACACTTTA (8) 3.8 0.0038 E14.5 retina TGACACTTTA (8) 3.6 0.0036 E14.5 retina AGTTTACAAA (2) 1.8 0.0018 E16.5 retina AAAGTAATCA (3) 1.8 0.0018 E16.5 retina TGAGTGCTGC (4) 1.8 0.0018 E16.5 retina TTCTTAGTTT (3) 1.8 0.0018 E18.5 retina TGACACTTTA (8) 3.6 0.0036 E18.5 retina AGTTTACAAA (2) 1.8 0.0018 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TTCTTAGTTT (3) 3.9 0.0039 P0.5 retina TGACACTTTA (8) 2 0.002 P2.5 retina TGACACTTTA (8) 5.3 0.0053 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGGTCACCTG (7) 1.8 0.0018 P2.5 retina TTCTTAGTTT (3) 1.8 0.0018 P2.5 retina TTTATTTCCT 1.8 0.0018 P4.5 retina TGACACTTTA (8) 5.9 0.0059 P4.5 retina TTCTTAGTTT (3) 4 0.004 P4.5 retina AAAGTAATCA (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina TGACACTTTA (8) 10 0.01 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AGTTTACAAA (2) 1.7 0.0017 P10.5 crx- retina TTCTTAGTTT (3) 5.6 0.0056 P10.5 crx- retina TGAGTGCTGC (4) 1.9 0.0019 P10.5 crx+ retina TGACACTTTA (8) 1.9 0.0019 P10.5 crx+ retina TGAGTGCTGC (4) 1.9 0.0019 P10.5 crx+ retina TGGTCACCTG (7) 1.9 0.0019 P10.5 crx+ retina TTCTTAGTTT (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGACACTTTA (8) 1.9 0.0019 Adult retinal TTCTTAGTTT (3) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TGACACTTTA (8) 3.8 0.0038 ONL TTCTTAGTTT (3) 1.9 0.0019