Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.158705
8430412M01Rik
RIKEN cDNA 8430412M01 gene
2
71483
Mm.158705
9530020D24Rik
RIKEN cDNA 9530020D24 gene
2
227746
Human Homolog
RAB9P40[Rab9 effector p40]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 48 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACCACCACA (
14
)
55.5
0.0555
P8 Cb GC
CGCCACCACA
(
11
)
1.6
0.0016
Cb medulloblastoma
CACCACCACA (
14
)
9.2
0.0092
Cb medulloblastoma
CGCCACCACA
(
11
)
6.9
0.0069
P8 GC+1d culture
CACCACCACA (
14
)
50.2
0.0502
P8 GC+1d culture
CGCCACCACA
(
11
)
2.3
0.0023
P8 GC+1d culture
GCCAGTGATG
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CACCACCACA (
14
)
30.4
0.0304
P8 GC+SHH+1d culture
CGCCACCACA
(
11
)
2.3
0.0023
P8 GC+SHH+1d culture
GCCAGTGATG
(
2
)
1.2
0.0012
3T3 fibroblasts
CACCACCACA (
14
)
287.4
0.2874
3T3 fibroblasts
CCAGCTTCCT
(
5
)
28
0.028
3T3 fibroblasts
CGCCACCACA
(
11
)
10.5
0.0105
3T3 fibroblasts
GCCAGTGATG
(
2
)
3.5
0.0035
E15 cortex
CACCACCACA (
14
)
34.6
0.0346
E15 cortex
CGCCACCACA
(
11
)
4.9
0.0049
P1 cortex
CACCACCACA (
14
)
27.3
0.0273
P1 cortex
CGCCACCACA
(
11
)
4.5
0.0045
Hypothalamus
CACCACCACA (
14
)
18.1
0.0181
Hypothalamus
GCCAGTGATG
(
2
)
1.8
0.0018
E12.5 retina
CACCACCACA (
14
)
41.3
0.0413
E12.5 retina
GCCAGTGATG
(
2
)
1.9
0.0019
E14.5 retina
CACCACCACA (
14
)
9.1
0.0091
E14.5 retina
CGCCACCACA
(
11
)
3.6
0.0036
E14.5 retina
GCCAGTGATG
(
2
)
1.8
0.0018
E16.5 retina
CACCACCACA (
14
)
18.1
0.0181
E16.5 retina
CGCCACCACA
(
11
)
1.8
0.0018
E16.5 retina
GCCAGTGATG
(
2
)
1.8
0.0018
E18.5 retina
CACCACCACA (
14
)
23.6
0.0236
E18.5 retina
CGCCACCACA
(
11
)
3.6
0.0036
P0.5 retina
CACCACCACA (
14
)
41.2
0.0412
P0.5 retina
CGCCACCACA
(
11
)
7.9
0.0079
P2.5 retina
CACCACCACA (
14
)
24.6
0.0246
P2.5 retina
CGCCACCACA
(
11
)
12.3
0.0123
P4.5 retina
CACCACCACA (
14
)
25.8
0.0258
P4.5 retina
CGCCACCACA
(
11
)
4
0.004
P6.5 retina
CACCACCACA (
14
)
28.3
0.0283
P6.5 retina
CGCCACCACA
(
11
)
8.3
0.0083
P6.5 retina
GCCAGTGATG
(
2
)
8.3
0.0083
P10.5 crx- retina
CACCACCACA (
14
)
13
0.013
P10.5 crx- retina
GCCAGTGATG
(
2
)
5.6
0.0056
P10.5 crx- retina
CCAGCTTCCT
(
5
)
1.9
0.0019
P10.5 crx+ retina
CACCACCACA (
14
)
17.3
0.0173
P10.5 crx+ retina
GCCAGTGATG
(
2
)
1.9
0.0019
Adult retinal
CACCACCACA (
14
)
13
0.013
Adult retinal
CGCCACCACA
(
11
)
5.6
0.0056
ONL
CACCACCACA (
14
)
23
0.023
ONL
CGCCACCACA
(
11
)
1.9
0.0019
