Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.158827
2410003P15Rik
RIKEN cDNA 2410003P15 gene
2
56046
Mm.158827
2310008B10Rik
RIKEN cDNA 2310008B10 gene
2
70094
Mm.158827
2310079L17Rik
RIKEN cDNA 2310079L17 gene
2
72448
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 66 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
CACCAAAATA
(
4
)
1.6
0.0016
P8 Cb GC
GAAAGAAAAA (
9
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
GAAAGAAAAA (
9
)
6.9
0.0069
Cb medulloblastoma
CACCAAAATA
(
4
)
4.6
0.0046
Cb medulloblastoma
GAGAAGTGCT (
7
)
2.3
0.0023
Cb medulloblastoma
GGGTTGAAGT
(
6
)
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
CACCAAAATA
(
4
)
2.3
0.0023
P8 GC+1d culture
GAGAAGTGCT (
7
)
1.1
0.0011
P8 GC+1d culture
GGGTTGAAGT
(
6
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
CACCAAAATA
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
GAAAGAAAAA (
9
)
2.3
0.0023
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
ATCTACAGAG
(
3
)
4.5
0.0045
P1 cortex
GAGAAGTGCT (
7
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
GAAAGAAAAA (
9
)
1.8
0.0018
Hypothalamus
GCCTTGGCTG
(
6
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
GGGTTGAAGT
(
6
)
5.6
0.0056
E12.5 retina
CACCAAAATA
(
4
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
ATCTACAGAG
(
3
)
3.6
0.0036
E14.5 retina
CACCAAAATA
(
4
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
GGGTTGAAGT
(
6
)
3.6
0.0036
E16.5 retina
CACCAAAATA
(
4
)
1.8
0.0018
E16.5 retina
GAAAGAAAAA (
9
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
CACCAAAATA
(
4
)
5.5
0.0055
E18.5 retina
GGGTTGAAGT
(
6
)
5.5
0.0055
E18.5 retina
GAAAGAAAAA (
9
)
3.6
0.0036
E18.5 retina
GCCTTGGCTG
(
6
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
ATCTACAGAG
(
3
)
2
0.002
P0.5 retina
CACCAAAATA
(
4
)
2
0.002
P0.5 retina
GCCTTGGCTG
(
6
)
2
0.002
P0.5 retina
GTCTTGCTGT
(
4
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
CACCAAAATA
(
4
)
3.5
0.0035
P2.5 retina
GAAAGAAAAA (
9
)
1.8
0.0018
P2.5 retina
GAGAAGTGCT (
7
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
CACCAAAATA
(
4
)
2
0.002
P4.5 retina
GGGTTGAAGT
(
6
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GGGTTGAAGT
(
6
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
GGGTTGAAGT
(
6
)
3.7
0.0037
P10.5 crx- retina
GAAAGAAAAA (
9
)
1.9
0.0019
P10.5 crx- retina
GTCTTGCTGT
(
4
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
GGGTTGAAGT
(
6
)
3.8
0.0038
P10.5 crx+ retina
GAAAGAAAAA (
9
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
CACCAAAATA
(
4
)
7.4
0.0074
Adult retinal
GGGTTGAAGT
(
6
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
CACCAAAATA
(
4
)
3.8
0.0038
ONL
ATCTACAGAG
(
3
)
1.9
0.0019
ONL
GCCTTGGCTG
(
6
)
1.9
0.0019
