Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.159684
Tmpo
thymopoietin
10
10 C2 (10 49.0 cM)
21917
Mm.159684
5830485P09Rik
RIKEN cDNA 5830485P09 gene
10
76121
Mm.159684
AW547477
expressed sequence AW547477
10
103472
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 162 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
GTGATGTAAT
(
3
)
17.9
0.0179
P8 Cb GC
TTTTGCCTTA
(
5
)
9.8
0.0098
P8 Cb GC
CCATTTTTTA
(
6
)
8.2
0.0082
P8 Cb GC
TACCTGTGAA
(
4
)
8.2
0.0082
P8 Cb GC
AGGTAAATTT (
4
)
4.9
0.0049
P8 Cb GC
TATGGCTTAG
(
5
)
4.9
0.0049
P8 Cb GC
GGTTTTGTGT (
10
)
3.3
0.0033
P8 Cb GC
ATTCCGAATT (
107
)
1.6
0.0016
P8 Cb GC
GAAGTCCTAC
(
3
)
1.6
0.0016
P8 Cb GC
GACCCCCCCC (
14
)
1.6
0.0016
P8 Cb GC
TGGATAAAAA
(
5
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
CCATTTTTTA
(
6
)
6.9
0.0069
Cb medulloblastoma
GGTTTTGTGT (
10
)
4.6
0.0046
Cb medulloblastoma
TGGATAAAAA
(
5
)
4.6
0.0046
Cb medulloblastoma
GACCCCCCCC (
14
)
2.3
0.0023
Cb medulloblastoma
TACCTGTGAA
(
4
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
GTGATGTAAT
(
3
)
8
0.008
P8 GC+1d culture
CCATTTTTTA
(
6
)
5.7
0.0057
P8 GC+1d culture
GACCCCCCCC (
14
)
5.7
0.0057
P8 GC+1d culture
GGTTTTGTGT (
10
)
5.7
0.0057
P8 GC+1d culture
TACCTGTGAA
(
4
)
3.4
0.0034
P8 GC+1d culture
AGGTAAATTT (
4
)
2.3
0.0023
P8 GC+1d culture
GTGGGAACAA (
6
)
2.3
0.0023
P8 GC+1d culture
TATGGCTTAG
(
5
)
2.3
0.0023
P8 GC+1d culture
GCACAGGCAG (
7
)
1.1
0.0011
P8 GC+1d culture
TGGGATAAAA (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GTGATGTAAT
(
3
)
22.2
0.0222
P8 GC+SHH+1d culture
GACCCCCCCC (
14
)
8.2
0.0082
P8 GC+SHH+1d culture
CCATTTTTTA
(
6
)
5.9
0.0059
P8 GC+SHH+1d culture
TACCTGTGAA
(
4
)
5.9
0.0059
P8 GC+SHH+1d culture
GGTTTTGTGT (
10
)
3.5
0.0035
P8 GC+SHH+1d culture
GAAGTCCTAC
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TATGGCTTAG
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
TTTTGCCTTA
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
AGGTAAATTT (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
CTTGAAATTT (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TGGATAAAAA
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TGGCTCATCT
(
7
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTTACCTGG
(
3
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
CCATTTTTTA
(
6
)
3.5
0.0035
3T3 fibroblasts
GACACCGAGA
(
5
)
3.5
0.0035
3T3 fibroblasts
GTGGGAACAA (
6
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GACCCCCCCC (
14
)
34.6
0.0346
E15 cortex
GTGATGTAAT
(
3
)
9.9
0.0099
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
GTGGGAACAA (
6
)
9.1
0.0091
P1 cortex
GACCCCCCCC (
14
)
4.5
0.0045
P1 cortex
GGTTTTGTGT (
10
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
AGGTAAATTT (
4
)
1.8
0.0018
Hypothalamus
CCCTTTTTTT (
11
)
1.8
0.0018
Hypothalamus
GGTTTTGTGT (
10
)
1.8
0.0018
Hypothalamus
GTGATGTAAT
(
3
)
1.8
0.0018
Hypothalamus
TGGCTCATCT
(
7
)
1.8
0.0018
Hypothalamus
TTTTGTGTAT (
4
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
GTGATGTAAT
(
3
)
24.4
0.0244
E12.5 retina
TACCTGTGAA
(
4
)
11.3
0.0113
E12.5 retina
CCATTTTTTA
(
6
)
3.8
0.0038
E12.5 retina
GAAGTCCTAC
(
3
)
3.8
0.0038
E12.5 retina
TATGGCTTAG
(
5
)
3.8
0.0038
E12.5 retina
TTTTACCTGG
(
3
)
3.8
0.0038
E12.5 retina
TTTTGCCTTA
(
5
)
3.8
0.0038
E12.5 retina
GTGGGAACAA (
6
)
1.9
0.0019
E12.5 retina
TAGAAAATAA
(
3
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
GTGATGTAAT
(
3
)
16.4
0.0164
E14.5 retina
CCATTTTTTA
(
6
)
7.3
0.0073
E14.5 retina
TACCTGTGAA
(
4
)
3.6
0.0036
E14.5 retina
TTTTACCTGG
(
3
)
3.6
0.0036
E14.5 retina
GGTTTTGTGT (
10
)
1.8
0.0018
E14.5 retina
TACAAAATAA (
7
)
1.8
0.0018
E14.5 retina
TTTTGCCTTA
(
5
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
GTGATGTAAT
(
3
)
16.3
0.0163
E16.5 retina
CCATTTTTTA
(
6
)
3.6
0.0036
E16.5 retina
GACACCGAGA
(
5
)
3.6
0.0036
E16.5 retina
GGTTTTGTGT (
10
)
3.6
0.0036
E16.5 retina
GTGGGAACAA (
6
)
3.6
0.0036
E16.5 retina
TTTTGCCTTA
(
5
)
3.6
0.0036
E16.5 retina
TACCTGTGAA
(
4
)
1.8
0.0018
E16.5 retina
TAGAAAATAA
(
3
)
1.8
0.0018
E16.5 retina
TTCTGGTCTC
(
5
)
1.8
0.0018
E18.5 retina
GTGATGTAAT
(
3
)
36.4
0.0364
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
CCATTTTTTA
(
6
)
3.6
0.0036
E18.5 retina
GACCCCCCCC (
14
)
1.8
0.0018
E18.5 retina
TACCTGTGAA
(
4
)
1.8
0.0018
E18.5 retina
TAGAAAATAA
(
3
)
1.8
0.0018
E18.5 retina
TATGGCTTAG
(
5
)
1.8
0.0018
E18.5 retina
TGGATAAAAA
(
5
)
1.8
0.0018
E18.5 retina
TTTTACCTGG
(
3
)
1.8
0.0018
E18.5 retina
TTTTGCCTTA
(
5
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GTGATGTAAT
(
3
)
33.4
0.0334
P0.5 retina
TACCTGTGAA
(
4
)
7.9
0.0079
P0.5 retina
CCATTTTTTA
(
6
)
5.9
0.0059
P0.5 retina
GTGGGAACAA (
6
)
5.9
0.0059
P0.5 retina
TTCTGGTCTC
(
5
)
3.9
0.0039
P0.5 retina
TTTTGCCTTA
(
5
)
3.9
0.0039
P0.5 retina
CTTGAAATTT (
4
)
2
0.002
P0.5 retina
TTTTACCTGG
(
3
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
GTGATGTAAT
(
3
)
19.4
0.0194
P2.5 retina
TACCTGTGAA
(
4
)
10.6
0.0106
P2.5 retina
CCATTTTTTA
(
6
)
5.3
0.0053
P2.5 retina
GGTTTTGTGT (
10
)
5.3
0.0053
P2.5 retina
TACAAAATAA (
7
)
3.5
0.0035
P2.5 retina
AGGTAAATTT (
4
)
1.8
0.0018
P2.5 retina
GAAGTCCTAC
(
3
)
1.8
0.0018
P2.5 retina
TTTTACCTGG
(
3
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
GTGATGTAAT
(
3
)
17.8
0.0178
P4.5 retina
TATGGCTTAG
(
5
)
4
0.004
P4.5 retina
ATTCCGAATT (
107
)
2
0.002
P4.5 retina
CCATTTTTTA
(
6
)
2
0.002
P4.5 retina
TACAAAATAA (
7
)
2
0.002
P4.5 retina
TACCTGTGAA
(
4
)
2
0.002
P4.5 retina
TGGCTCATCT
(
7
)
2
0.002
P4.5 retina
TGGGATAAAA (
7
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GTGATGTAAT
(
3
)
6.7
0.0067
P6.5 retina
ATTCCGAATT (
107
)
3.3
0.0033
P6.5 retina
CCATTTTTTA
(
6
)
3.3
0.0033
P6.5 retina
CCCTTTTTTT (
11
)
1.7
0.0017
P6.5 retina
GCACAGGCAG (
7
)
1.7
0.0017
P6.5 retina
GGTTTTGTGT (
10
)
1.7
0.0017
P6.5 retina
TACCTGTGAA
(
4
)
1.7
0.0017
P6.5 retina
TGGGATAAAA (
7
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GTGATGTAAT
(
3
)
5.6
0.0056
P10.5 crx- retina
GTGGGAACAA (
6
)
5.6
0.0056
P10.5 crx- retina
TATGGTTAGA
(
3
)
3.7
0.0037
P10.5 crx- retina
GACCCCCCCC (
14
)
1.9
0.0019
P10.5 crx- retina
GGTTTTGTGT (
10
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TACCTGTGAA
(
4
)
5.8
0.0058
P10.5 crx+ retina
GTGATGTAAT
(
3
)
3.8
0.0038
P10.5 crx+ retina
CTTGAAATTT (
4
)
1.9
0.0019
P10.5 crx+ retina
GGTTTTGTGT (
10
)
1.9
0.0019
P10.5 crx+ retina
GTGGGAACAA (
6
)
1.9
0.0019
P10.5 crx+ retina
TATGGTTAGA
(
3
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
TTTTGTGTAT (
4
)
3.7
0.0037
Adult retinal
CCATTTTTTA
(
6
)
1.9
0.0019
Adult retinal
GACCCCCCCC (
14
)
1.9
0.0019
Adult retinal
GCACAGGCAG (
7
)
1.9
0.0019
Adult retinal
GGTTTTGTGT (
10
)
1.9
0.0019
Adult retinal
TACCTGTGAA
(
4
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TTTTGTGTAT (
4
)
23
0.023
ONL
GTGATGTAAT
(
3
)
5.7
0.0057
ONL
ATTCCGAATT (
107
)
3.8
0.0038
ONL
GGTTTTGTGT (
10
)
3.8
0.0038
ONL
AGGTAAATTT (
4
)
1.9
0.0019
ONL
TATGGTTAGA
(
3
)
1.9
0.0019
