Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.16771	H2-D1	histocompatibility 2, D region locus 1	17	17 19.09 cM	14964
Mm.16771	H2-K1	histocompatibility 2, K1, K region	17	17 18.44 cM	14972
Gene Ontology	antigen presentation, endogenous antigen | antigen processing, endogenous antigen via MHC class I | defense response | external side of plasma membrane | immune response | integral to membrane | membrane | MHC class I receptor activity
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 103 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TGGAAGAAAC (7) 8.2 0.0082 P8 Cb GC GATTGAGAAT (8) 4.9 0.0049 P8 Cb GC GGGAACCCCC (6) 3.3 0.0033 P8 Cb GC GGTGCCTGGC (8) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma TGGAAGAAAC (7) 37 0.037 Cb medulloblastoma GATTGAGAAT (8) 16.2 0.0162 Cb medulloblastoma GGGAACCCCC (6) 4.6 0.0046 Cb medulloblastoma AGAAGGAGAA (4) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GATTGAGAAT (8) 19.4 0.0194 P8 GC+1d culture GGGCCTGTGG (8) 10.3 0.0103 P8 GC+1d culture GGGAACCCCC (6) 8 0.008 P8 GC+1d culture TGGAAGAAAC (7) 6.8 0.0068 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GATTGAGAAT (8) 19.9 0.0199 P8 GC+SHH+1d culture GGGAACCCCC (6) 11.7 0.0117 P8 GC+SHH+1d culture TGGAAGAAAC (7) 9.4 0.0094 P8 GC+SHH+1d culture GGGCCTGTGG (8) 5.9 0.0059 P8 GC+SHH+1d culture AACCATCACT (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGCTCCTGC (16) 1.2 0.0012 P8 GC+SHH+1d culture TGCACCATAA (7) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GGTGCCTGGC (8) 17.5 0.0175 3T3 fibroblasts GGGCCTGTGG (8) 14 0.014 3T3 fibroblasts TGGAAGAAAC (7) 7 0.007 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GGGAACCCCC (6) 14.8 0.0148 E15 cortex AGAAGGAGAA (4) 4.9 0.0049 E15 cortex CTGCTCCTGC (16) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GGGAACCCCC (6) 13.6 0.0136 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TGGAAGAAAC (7) 19.9 0.0199 Hypothalamus GGGAACCCCC (6) 7.2 0.0072 Hypothalamus GATTGAGAAT (8) 3.6 0.0036 Hypothalamus GGGCCTGTGG (8) 3.6 0.0036 Hypothalamus TGCACCATAA (7) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TGGAAGAAAC (7) 18.8 0.0188 E12.5 retina GGGAACCCCC (6) 7.5 0.0075 E12.5 retina GGTGCCTGGC (8) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina AACCATCACT (3) 12.8 0.0128 E14.5 retina TGGAAGAAAC (7) 5.5 0.0055 E14.5 retina CTGCTCCTGC (16) 1.8 0.0018 E14.5 retina GATTGAGAAT (8) 1.8 0.0018 E14.5 retina GGGAACCCCC (6) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TGGAAGAAAC (7) 16.3 0.0163 E16.5 retina AACCATCACT (3) 5.4 0.0054 E16.5 retina GATTGAGAAT (8) 1.8 0.0018 E16.5 retina GGGAACCCCC (6) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina TGGAAGAAAC (7) 7.3 0.0073 E18.5 retina GGTGCCTGGC (8) 5.5 0.0055 E18.5 retina GGGAACCCCC (6) 3.6 0.0036 E18.5 retina AACCATCACT (3) 1.8 0.0018 E18.5 retina GATTGAGAAT (8) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GGGAACCCCC (6) 7.9 0.0079 P0.5 retina AGAAGGAGAA (4) 3.9 0.0039 P0.5 retina GGTGCCTGGC (8) 3.9 0.0039 P0.5 retina GATTGAGAAT (8) 2 0.002 P0.5 retina TGGAAGAAAC (7) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TGGAAGAAAC (7) 10.6 0.0106 P2.5 retina ATAGATGAAT (3) 7 0.007 P2.5 retina GATTGAGAAT (8) 1.8 0.0018 P2.5 retina GGGAACCCCC (6) 1.8 0.0018 P2.5 retina GGTGCCTGGC (8) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GGGAACCCCC (6) 11.9 0.0119 P4.5 retina TGGAAGAAAC (7) 7.9 0.0079 P4.5 retina GATTGAGAAT (8) 4 0.004 P4.5 retina GGGCTTTGGG (5) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TGGAAGAAAC (7) 8.3 0.0083 P6.5 retina GGGAACCCCC (6) 6.7 0.0067 P6.5 retina AACCATCACT (3) 1.7 0.0017 P6.5 retina GGTGCCTGGC (8) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TGGAAGAAAC (7) 31.6 0.0316 P10.5 crx- retina AACCATCACT (3) 7.4 0.0074 P10.5 crx- retina GGGAACCCCC (6) 7.4 0.0074 P10.5 crx- retina GATTGAGAAT (8) 5.6 0.0056 P10.5 crx- retina GGTGCCTGGC (8) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GGGAACCCCC (6) 13.5 0.0135 P10.5 crx+ retina TGGAAGAAAC (7) 9.6 0.0096 P10.5 crx+ retina GATTGAGAAT (8) 7.7 0.0077 P10.5 crx+ retina GGGCTTTGGG (5) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GATTGAGAAT (8) 7.4 0.0074 Adult retinal GGGAACCCCC (6) 7.4 0.0074 Adult retinal TGGAAGAAAC (7) 5.6 0.0056 Adult retinal GGGCCTGTGG (8) 3.7 0.0037 Adult retinal GGGCTTTGGG (5) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL TGGAAGAAAC (7) 7.7 0.0077 ONL GGGAACCCCC (6) 3.8 0.0038 ONL GATTGAGAAT (8) 1.9 0.0019