Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.168965	C130015C19	hypothetical LOC403342			403342
Mm.168965	Nsd1	nuclear receptor-binding SET-domain protein 1	13	13 B1	18193
Gene Ontology	gastrulation (sensu Mammalia) | histone methyltransferase activity | negative regulation of transcription from Pol II promoter | nucleus | protein binding | receptor activity | regulation of transcription, DNA-dependent | transcription cofactor activity
Human Homolog	NSD1[nuclear receptor binding SET domain protein 1] | NSD1[nuclear receptor binding SET domain protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 139 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGCGGCTTC (2) 9.8 0.0098 P8 Cb GC TACTGTAATT (4) 8.2 0.0082 P8 Cb GC AATAGCTCCA (2) 1.6 0.0016 P8 Cb GC CTGTGTGTAA (6) 1.6 0.0016 P8 Cb GC GCAGCCACTC (5) 1.6 0.0016 P8 Cb GC GGTTTCCAGT (4) 1.6 0.0016 P8 Cb GC GTGAGTTCCA (7) 1.6 0.0016 P8 Cb GC TGTGTGCCCA (7) 1.6 0.0016 Cb medulloblastoma CTGCGGCTTC (2) 55.5 0.0555 Cb medulloblastoma CTGTGTGTAA (6) 4.6 0.0046 Cb medulloblastoma TGTGTGCCCA (7) 4.6 0.0046 Cb medulloblastoma AAATAAACTG (5) 2.3 0.0023 Cb medulloblastoma GAAAACAGAA (13) 2.3 0.0023 Cb medulloblastoma GGTTTCCAGT (4) 2.3 0.0023 Cb medulloblastoma TACTGTAATT (4) 2.3 0.0023 P8 GC+1d culture CTGCGGCTTC (2) 10.3 0.0103 P8 GC+1d culture TACTGTAATT (4) 9.1 0.0091 P8 GC+1d culture AAATAAACTG (5) 4.6 0.0046 P8 GC+1d culture AATAGCTCCA (2) 2.3 0.0023 P8 GC+1d culture GGGACTTGTG (4) 2.3 0.0023 P8 GC+1d culture AGAATATTTT (6) 1.1 0.0011 P8 GC+1d culture CTGGGCAAGT (8) 1.1 0.0011 P8 GC+1d culture CTGTGTGTAA (6) 1.1 0.0011 P8 GC+1d culture GTGAGTTCCA (7) 1.1 0.0011 P8 GC+1d culture TGTGTGCCCA (7) 1.1 0.0011 P8 GC+1d culture TTCCAACCAG (2) 1.1 0.0011 P8 GC+SHH+1d culture CTGCGGCTTC (2) 10.5 0.0105 P8 GC+SHH+1d culture TACTGTAATT (4) 9.4 0.0094 P8 GC+SHH+1d culture GTGAGTTCCA (7) 5.9 0.0059 P8 GC+SHH+1d culture AAATAAACTG (5) 4.7 0.0047 P8 GC+SHH+1d culture AGACAGCTCC (3) 3.5 0.0035 P8 GC+SHH+1d culture TGTGTGCCCA (7) 3.5 0.0035 P8 GC+SHH+1d culture CTGTGTGTAA (6) 2.3 0.0023 P8 GC+SHH+1d culture GGGACTTGTG (4) 2.3 0.0023 P8 GC+SHH+1d culture TTCCAACCAG (2) 2.3 0.0023 P8 GC+SHH+1d culture AGAATATTTT (6) 1.2 0.0012 3T3 fibroblasts CTGCGGCTTC (2) 42.1 0.0421 3T3 fibroblasts CTGTGTGTAA (6) 3.5 0.0035 3T3 fibroblasts TACTGTAATT (4) 3.5 0.0035 E15 cortex CTGCGGCTTC (2) 9.9 0.0099 E15 cortex TACTGTAATT (4) 9.9 0.0099 E15 cortex TGTGTGCCCA (7) 9.9 0.0099 E15 cortex GGGACTTGTG (4) 4.9 0.0049 E15 cortex GTGAGTTCCA (7) 4.9 0.0049 P1 cortex CTGCGGCTTC (2) 18.2 0.0182 P1 cortex AAATAAACTG (5) 13.6 0.0136 P1 cortex GAAAACAGAA (13) 4.5 0.0045 Hypothalamus CTGCGGCTTC (2) 88.7 0.0887 Hypothalamus TGTGTGCCCA (7) 3.6 0.0036 Hypothalamus AAATAAACTG (5) 1.8 0.0018 Hypothalamus CTGGGCAAGT (8) 1.8 0.0018 Hypothalamus GGGACTTGTG (4) 1.8 0.0018 E12.5 retina CTGCGGCTTC (2) 24.4 0.0244 E12.5 retina AAATAAACTG (5) 9.4 0.0094 E12.5 retina TACTGTAATT (4) 7.5 0.0075 E12.5 retina GGGACTTGTG (4) 5.6 0.0056 E12.5 retina GTGAGTTCCA (7) 5.6 0.0056 E12.5 retina CTGGGCAAGT (8) 1.9 0.0019 E12.5 retina GCAGCCACTC (5) 1.9 0.0019 E12.5 retina TTCCAACCAG (2) 1.9 0.0019 E14.5 retina CTGCGGCTTC (2) 16.4 0.0164 E14.5 retina AAATAAACTG (5) 12.8 0.0128 E14.5 retina CTGAGTTGCC (3) 3.6 0.0036 E14.5 retina GTGAGTTCCA (7) 3.6 0.0036 E14.5 retina TGTGTGCCCA (7) 3.6 0.0036 E14.5 retina CTGTGTGTAA (6) 1.8 0.0018 E16.5 retina AAATAAACTG (5) 12.7 0.0127 E16.5 retina CTGCGGCTTC (2) 12.7 0.0127 E16.5 retina CTGGGCAAGT (8) 3.6 0.0036 E16.5 retina TACTGTAATT (4) 3.6 0.0036 E16.5 retina CTGTGTGTAA (6) 1.8 0.0018 E16.5 retina GGGACTTGTG (4) 1.8 0.0018 E16.5 retina TGTGTGCCCA (7) 1.8 0.0018 E18.5 retina CTGCGGCTTC (2) 58.2 0.0582 E18.5 retina TACTGTAATT (4) 7.3 0.0073 E18.5 retina AAATAAACTG (5) 5.5 0.0055 E18.5 retina GCAGCCACTC (5) 1.8 0.0018 E18.5 retina GTGAGTTCCA (7) 1.8 0.0018 P0.5 retina CTGCGGCTTC (2) 9.8 0.0098 P0.5 retina TGTGTGCCCA (7) 5.9 0.0059 P0.5 retina AAATAAACTG (5) 3.9 0.0039 P0.5 retina AGAATATTTT (6) 2 0.002 P0.5 retina CTGTGTGTAA (6) 2 0.002 P0.5 retina GTGAGTTCCA (7) 2 0.002 P0.5 retina TACTGTAATT (4) 2 0.002 P0.5 retina TTCCAACCAG (2) 2 0.002 P2.5 retina AAATAAACTG (5) 14.1 0.0141 P2.5 retina CTGCGGCTTC (2) 12.3 0.0123 P2.5 retina CTGTGTGTAA (6) 3.5 0.0035 P2.5 retina GGGACTTGTG (4) 3.5 0.0035 P2.5 retina GTGAGTTCCA (7) 3.5 0.0035 P2.5 retina TACTGTAATT (4) 3.5 0.0035 P2.5 retina AGAATATTTT (6) 1.8 0.0018 P2.5 retina GAAAACAGAA (13) 1.8 0.0018 P2.5 retina GGTTTCCAGT (4) 1.8 0.0018 P2.5 retina TGTGTGCCCA (7) 1.8 0.0018 P4.5 retina CTGCGGCTTC (2) 25.8 0.0258 P4.5 retina TACTGTAATT (4) 9.9 0.0099 P4.5 retina AAATAAACTG (5) 5.9 0.0059 P4.5 retina CTGTGTGTAA (6) 4 0.004 P4.5 retina GAAAACAGAA (13) 4 0.004 P4.5 retina GTGAGTTCCA (7) 4 0.004 P4.5 retina AATAGCTCCA (2) 2 0.002 P4.5 retina GGGACTTGTG (4) 2 0.002 P4.5 retina TGTGTGCCCA (7) 2 0.002 P6.5 retina CTGCGGCTTC (2) 31.7 0.0317 P6.5 retina AAATAAACTG (5) 13.3 0.0133 P6.5 retina TACTGTAATT (4) 8.3 0.0083 P6.5 retina GTGAGTTCCA (7) 5 0.005 P6.5 retina CTGTGTGTAA (6) 1.7 0.0017 P6.5 retina GGGACTTGTG (4) 1.7 0.0017 P10.5 crx- retina TACTGTAATT (4) 13 0.013 P10.5 crx- retina AAATAAACTG (5) 7.4 0.0074 P10.5 crx- retina CTGCGGCTTC (2) 3.7 0.0037 P10.5 crx- retina GGGACTTGTG (4) 3.7 0.0037 P10.5 crx- retina GTGAGTTCCA (7) 3.7 0.0037 P10.5 crx- retina CTGGGCAAGT (8) 1.9 0.0019 P10.5 crx- retina CTGTGTGTAA (6) 1.9 0.0019 P10.5 crx- retina TGTGTGCCCA (7) 1.9 0.0019 P10.5 crx+ retina CTGCGGCTTC (2) 30.8 0.0308 P10.5 crx+ retina AAATAAACTG (5) 9.6 0.0096 P10.5 crx+ retina TACTGTAATT (4) 7.7 0.0077 P10.5 crx+ retina CTGTGTGTAA (6) 3.8 0.0038 P10.5 crx+ retina TGTGTGCCCA (7) 3.8 0.0038 P10.5 crx+ retina GGGACTTGTG (4) 1.9 0.0019 Adult retinal CTGCGGCTTC (2) 18.5 0.0185 Adult retinal CTGTGTGTAA (6) 3.7 0.0037 Adult retinal TGTGTGCCCA (7) 3.7 0.0037 Adult retinal CTGAGTTGCC (3) 1.9 0.0019 Adult retinal CTGGGCAAGT (8) 1.9 0.0019 Adult retinal TACTGTAATT (4) 1.9 0.0019 Adult retinal TTCCAACCAG (2) 1.9 0.0019 ONL CTGCGGCTTC (2) 11.5 0.0115 ONL AAATAAACTG (5) 5.7 0.0057 ONL TACTGTAATT (4) 3.8 0.0038 ONL CTGTGTGTAA (6) 1.9 0.0019 ONL GGTTTCCAGT (4) 1.9 0.0019 ONL GTGAGTTCCA (7) 1.9 0.0019 ONL TGTGTGCCCA (7) 1.9 0.0019