Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.172720
AA959742
expressed sequence AA959742
11
11 D
98238
Mm.172720
AI596487
expressed sequence AI596487
11
103797
Mm.172720
C78668
expressed sequence C78668
11
97711
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 5 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 131 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAATAAACTG (
8
)
79.9
0.0799
P8 Cb GC
GCTGCTGGTG (
9
)
13.1
0.0131
P8 Cb GC
TGTGAGTGGT
(
7
)
11.4
0.0114
P8 Cb GC
TCTGAGTGGT
(
3
)
9.8
0.0098
P8 Cb GC
AAAGGGATCA (
6
)
1.6
0.0016
P8 Cb GC
TAGGCCACAC
(
3
)
1.6
0.0016
P8 Cb GC
TCTGAGTGGA
(
3
)
1.6
0.0016
P8 Cb GC
TGTAGCAGGA (
4
)
1.6
0.0016
Cb medulloblastoma
CAATAAACTG (
8
)
99.4
0.0994
Cb medulloblastoma
GCTGCTGGTG (
9
)
23.1
0.0231
Cb medulloblastoma
TCTGAGTGGT
(
3
)
9.2
0.0092
Cb medulloblastoma
TGTGAGTGGT
(
7
)
4.6
0.0046
Cb medulloblastoma
ACCAAGGCCT (
8
)
2.3
0.0023
P8 GC+1d culture
CAATAAACTG (
8
)
93.6
0.0936
P8 GC+1d culture
GCTGCTGGTG (
9
)
16
0.016
P8 GC+1d culture
TGTGAGTGGT
(
7
)
13.7
0.0137
P8 GC+1d culture
TCTGAGTGGT
(
3
)
10.3
0.0103
P8 GC+1d culture
ATGTCACCAT
(
3
)
1.1
0.0011
P8 GC+1d culture
GATTTAATAA (
7
)
1.1
0.0011
P8 GC+1d culture
TCTGAGTGGA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CAATAAACTG (
8
)
117.1
0.1171
P8 GC+SHH+1d culture
TCTGAGTGGT
(
3
)
18.7
0.0187
P8 GC+SHH+1d culture
TGTGAGTGGT
(
7
)
11.7
0.0117
P8 GC+SHH+1d culture
GCTGCTGGTG (
9
)
8.2
0.0082
P8 GC+SHH+1d culture
ATGTCACCAT
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TAGGCCACAC
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
ACCAAGGCCT (
8
)
1.2
0.0012
P8 GC+SHH+1d culture
CCTAAAGGAG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GATTTAATAA (
7
)
1.2
0.0012
P8 GC+SHH+1d culture
TCTGAGTGGA
(
3
)
1.2
0.0012
3T3 fibroblasts
CAATAAACTG (
8
)
17.5
0.0175
3T3 fibroblasts
TGTGAGTGGT
(
7
)
10.5
0.0105
3T3 fibroblasts
TCTGAGTGGT
(
3
)
7
0.007
3T3 fibroblasts
ACCAAGGCCT (
8
)
3.5
0.0035
3T3 fibroblasts
CCTAAAGGAG
(
3
)
3.5
0.0035
3T3 fibroblasts
GCTGCTGGTG (
9
)
3.5
0.0035
3T3 fibroblasts
GTGGCGCTGC
(
5
)
3.5
0.0035
E15 cortex
GCTGCTGGTG (
9
)
14.8
0.0148
E15 cortex
TAGGCCACAC
(
3
)
4.9
0.0049
P1 cortex
CAATAAACTG (
8
)
13.6
0.0136
P1 cortex
GCTGCTGGTG (
9
)
13.6
0.0136
P1 cortex
AAGGGATCAG
(
3
)
4.5
0.0045
P1 cortex
CCTAAAGGAG
(
3
)
4.5
0.0045
P1 cortex
TGTGAGTGGT
(
7
)
4.5
0.0045
Hypothalamus
CAATAAACTG (
8
)
77.9
0.0779
Hypothalamus
GCTGCTGGTG (
9
)
18.1
0.0181
Hypothalamus
TCTGAGTGGT
(
3
)
5.4
0.0054
Hypothalamus
TGTGAGTGGT
(
7
)
3.6
0.0036
Hypothalamus
AAAACAGGAG
(
4
)
1.8
0.0018
Hypothalamus
AAGGGATCAG
(
3
)
1.8
0.0018
Hypothalamus
GTGGCGCTGC
(
5
)
1.8
0.0018
E12.5 retina
CAATAAACTG (
8
)
75.1
0.0751
E12.5 retina
TCTGAGTGGT
(
3
)
20.7
0.0207
E12.5 retina
GCTGCTGGTG (
9
)
5.6
0.0056
E12.5 retina
TGTGAGTGGT
(
7
)
5.6
0.0056
E12.5 retina
AAAACAGGAG
(
4
)
1.9
0.0019
E14.5 retina
CAATAAACTG (
8
)
116.6
0.1166
E14.5 retina
TCTGAGTGGT
(
3
)
16.4
0.0164
E14.5 retina
GCTGCTGGTG (
9
)
14.6
0.0146
E14.5 retina
ATGTCACCAT
(
3
)
7.3
0.0073
E14.5 retina
GATTTAATAA (
7
)
3.6
0.0036
E14.5 retina
AAAGGGATCA (
6
)
1.8
0.0018
E14.5 retina
TCTGAGTGGA
(
3
)
1.8
0.0018
E14.5 retina
TGTGAGTGGT
(
7
)
1.8
0.0018
E16.5 retina
CAATAAACTG (
8
)
81.5
0.0815
E16.5 retina
GCTGCTGGTG (
9
)
12.7
0.0127
E16.5 retina
TCTGAGTGGT
(
3
)
7.2
0.0072
E16.5 retina
TGTGAGTGGT
(
7
)
3.6
0.0036
E16.5 retina
AAGGGATCAG
(
3
)
1.8
0.0018
E16.5 retina
CCTAAAGGAG
(
3
)
1.8
0.0018
E16.5 retina
TCTGAGTGGA
(
3
)
1.8
0.0018
E18.5 retina
CAATAAACTG (
8
)
149.2
0.1492
E18.5 retina
GCTGCTGGTG (
9
)
34.6
0.0346
E18.5 retina
TCTGAGTGGT
(
3
)
25.5
0.0255
E18.5 retina
AAAGGGATCA (
6
)
5.5
0.0055
E18.5 retina
ATGTCACCAT
(
3
)
5.5
0.0055
E18.5 retina
TAGGCCACAC
(
3
)
3.6
0.0036
E18.5 retina
TCTGAGTGGA
(
3
)
3.6
0.0036
P0.5 retina
CAATAAACTG (
8
)
60.8
0.0608
P0.5 retina
TCTGAGTGGT
(
3
)
9.8
0.0098
P0.5 retina
TGTGAGTGGT
(
7
)
7.9
0.0079
P0.5 retina
GCTGCTGGTG (
9
)
5.9
0.0059
P0.5 retina
ATGTCACCAT
(
3
)
3.9
0.0039
P0.5 retina
TCTGAGTGGA
(
3
)
3.9
0.0039
P0.5 retina
AAAGGGATCA (
6
)
2
0.002
P0.5 retina
ACCAAGGCCT (
8
)
2
0.002
P2.5 retina
CAATAAACTG (
8
)
88
0.088
P2.5 retina
GCTGCTGGTG (
9
)
17.6
0.0176
P2.5 retina
TCTGAGTGGT
(
3
)
17.6
0.0176
P2.5 retina
AAAGGGATCA (
6
)
5.3
0.0053
P2.5 retina
TCTGAGTGGA
(
3
)
1.8
0.0018
P4.5 retina
CAATAAACTG (
8
)
105
0.105
P4.5 retina
TCTGAGTGGT
(
3
)
27.7
0.0277
P4.5 retina
GCTGCTGGTG (
9
)
19.8
0.0198
P4.5 retina
AAAGGGATCA (
6
)
5.9
0.0059
P4.5 retina
TCTGAGTGGA
(
3
)
2
0.002
P4.5 retina
TGTAGCAGGA (
4
)
2
0.002
P6.5 retina
CAATAAACTG (
8
)
73.4
0.0734
P6.5 retina
TCTGAGTGGT
(
3
)
23.3
0.0233
P6.5 retina
GCTGCTGGTG (
9
)
15
0.015
P6.5 retina
AAAGGGATCA (
6
)
8.3
0.0083
P6.5 retina
TCTGAGTGGA
(
3
)
3.3
0.0033
P6.5 retina
GTGGCGCTGC
(
5
)
1.7
0.0017
P6.5 retina
TGTGAGTGGT
(
7
)
1.7
0.0017
P10.5 crx- retina
CAATAAACTG (
8
)
27.9
0.0279
P10.5 crx- retina
AAAGGGATCA (
6
)
11.1
0.0111
P10.5 crx- retina
TCTGAGTGGT
(
3
)
7.4
0.0074
P10.5 crx- retina
GCTGCTGGTG (
9
)
3.7
0.0037
P10.5 crx- retina
TGTGAGTGGT
(
7
)
3.7
0.0037
P10.5 crx+ retina
CAATAAACTG (
8
)
48.1
0.0481
P10.5 crx+ retina
GCTGCTGGTG (
9
)
28.8
0.0288
P10.5 crx+ retina
TCTGAGTGGT
(
3
)
15.4
0.0154
P10.5 crx+ retina
ACCAAGGCCT (
8
)
3.8
0.0038
P10.5 crx+ retina
TCTGAGTGGA
(
3
)
3.8
0.0038
P10.5 crx+ retina
AAAGGGATCA (
6
)
1.9
0.0019
P10.5 crx+ retina
TGTGAGTGGT
(
7
)
1.9
0.0019
Adult retinal
CAATAAACTG (
8
)
40.7
0.0407
Adult retinal
GCTGCTGGTG (
9
)
11.1
0.0111
Adult retinal
TCTGAGTGGT
(
3
)
5.6
0.0056
Adult retinal
TGTGAGTGGT
(
7
)
5.6
0.0056
Adult retinal
AAAGGGATCA (
6
)
3.7
0.0037
Adult retinal
AAAACAGGAG
(
4
)
1.9
0.0019
Adult retinal
TGTAGCAGGA (
4
)
1.9
0.0019
ONL
CAATAAACTG (
8
)
40.2
0.0402
ONL
GCTGCTGGTG (
9
)
13.4
0.0134
ONL
AAAACAGGAG
(
4
)
1.9
0.0019
ONL
AAAGGGATCA (
6
)
1.9
0.0019
ONL
TCTGAGTGGA
(
3
)
1.9
0.0019
ONL
TCTGAGTGGT
(
3
)
1.9
0.0019
ONL
TGTAGCAGGA (
4
)
1.9
0.0019
ONL
TGTGAGTGGT
(
7
)
1.9
0.0019
