Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.180734	Rpa1	replication protein A1	11	11 44.0 cM	68275
Gene Ontology	chromatin binding | condensed chromosome | DNA replication | meiosis | nucleic acid binding | nucleus | nucleus
Human Homolog	RPA1[replication protein A1, 70kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 73 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTTCTTTG (7) 3.3 0.0033 P8 Cb GC GCTTCAGTTT (3) 3.3 0.0033 P8 Cb GC CTGGCACGCA (2) 1.6 0.0016 P8 Cb GC GTGACTGTTC (4) 1.6 0.0016 Cb medulloblastoma GCTTCAGTTT (3) 9.2 0.0092 Cb medulloblastoma CTGGCACGCA (2) 4.6 0.0046 Cb medulloblastoma GTGACTGTTC (4) 2.3 0.0023 Cb medulloblastoma TTCTTCCTGA (4) 2.3 0.0023 P8 GC+1d culture GTGACTGTTC (4) 9.1 0.0091 P8 GC+1d culture GATTTCTTTG (7) 8 0.008 P8 GC+1d culture GCTTCAGTTT (3) 3.4 0.0034 P8 GC+1d culture GGACAGCTCC (11) 2.3 0.0023 P8 GC+1d culture CTGGCACGCA (2) 1.1 0.0011 P8 GC+1d culture CTGTTATCAT (2) 1.1 0.0011 P8 GC+SHH+1d culture GCTTCAGTTT (3) 5.9 0.0059 P8 GC+SHH+1d culture GATTTCTTTG (7) 3.5 0.0035 P8 GC+SHH+1d culture GTGACTGTTC (4) 3.5 0.0035 P8 GC+SHH+1d culture CTGTTATCAT (2) 1.2 0.0012 P8 GC+SHH+1d culture GGACAGCTCC (11) 1.2 0.0012 3T3 fibroblasts GCTTCAGTTT (3) 14 0.014 E15 cortex GTGACTGTTC (4) 14.8 0.0148 E15 cortex GCTTCAGTTT (3) 9.9 0.0099 P1 cortex CTGGCACGCA (2) 4.5 0.0045 Hypothalamus CTGGCACGCA (2) 1.8 0.0018 E12.5 retina GCTTCAGTTT (3) 9.4 0.0094 E12.5 retina GATTTCTTTG (7) 3.8 0.0038 E12.5 retina CTGTTATCAT (2) 1.9 0.0019 E12.5 retina GTGACTGTTC (4) 1.9 0.0019 E14.5 retina GATTTCTTTG (7) 7.3 0.0073 E14.5 retina GCGGCGGGAC 3.6 0.0036 E14.5 retina GCTTCAGTTT (3) 1.8 0.0018 E16.5 retina GATTTCTTTG (7) 5.4 0.0054 E16.5 retina GTGACTGTTC (4) 5.4 0.0054 E16.5 retina GCTTCAGTTT (3) 3.6 0.0036 E16.5 retina TTCTTCCTGA (4) 1.8 0.0018 E18.5 retina GCTTCAGTTT (3) 7.3 0.0073 E18.5 retina CTGGCACGCA (2) 1.8 0.0018 E18.5 retina GATTTCTTTG (7) 1.8 0.0018 E18.5 retina GTGACTGTTC (4) 1.8 0.0018 P0.5 retina GCTTCAGTTT (3) 13.7 0.0137 P0.5 retina CTGGCACGCA (2) 7.9 0.0079 P0.5 retina GATTTCTTTG (7) 5.9 0.0059 P0.5 retina GTGACTGTTC (4) 5.9 0.0059 P2.5 retina GCTTCAGTTT (3) 5.3 0.0053 P2.5 retina CTGGCACGCA (2) 3.5 0.0035 P2.5 retina GATTTCTTTG (7) 3.5 0.0035 P2.5 retina CTGTTATCAT (2) 1.8 0.0018 P2.5 retina GTGACTGTTC (4) 1.8 0.0018 P4.5 retina GCTTCAGTTT (3) 4 0.004 P4.5 retina GTGACTGTTC (4) 4 0.004 P4.5 retina CTGGCACGCA (2) 2 0.002 P4.5 retina GATTTCTTTG (7) 2 0.002 P6.5 retina GCTTCAGTTT (3) 5 0.005 P6.5 retina GTGACTGTTC (4) 5 0.005 P6.5 retina GATTTCTTTG (7) 1.7 0.0017 P10.5 crx- retina GTGACTGTTC (4) 13 0.013 P10.5 crx- retina GCTTCAGTTT (3) 5.6 0.0056 P10.5 crx- retina CTGGCACGCA (2) 1.9 0.0019 P10.5 crx- retina CTGTTATCAT (2) 1.9 0.0019 P10.5 crx- retina GTTTCAGTTT 1.9 0.0019 P10.5 crx+ retina GCTTCAGTTT (3) 7.7 0.0077 P10.5 crx+ retina CTGTTATCAT (2) 3.8 0.0038 P10.5 crx+ retina GATTTCTTTG (7) 3.8 0.0038 P10.5 crx+ retina CTGGCACGCA (2) 1.9 0.0019 P10.5 crx+ retina GTGACTGTTC (4) 1.9 0.0019 P10.5 crx+ retina TTCTTCCTGA (4) 1.9 0.0019 Adult retinal GCTTCAGTTT (3) 9.3 0.0093 Adult retinal GTGACTGTTC (4) 7.4 0.0074 Adult retinal CTGGCACGCA (2) 1.9 0.0019 ONL GCTTCAGTTT (3) 7.7 0.0077 ONL GTTTCAGTTT 3.8 0.0038 ONL GCGGCGGGAC 1.9 0.0019 ONL GTGACTGTTC (4) 1.9 0.0019