Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.181021	Col4a2	procollagen, type IV, alpha 2	8	8 5.0 cM	12827
Gene Ontology	basement membrane | cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL4A2[collagen, type IV, alpha 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGTGCTTC (2) 1.6 0.0016 P8 Cb GC CGCCACCACA (11) 1.6 0.0016 P8 Cb GC GCTCTAGCCA (3) 1.6 0.0016 Cb medulloblastoma CGCCACCACA (11) 6.9 0.0069 P8 GC+1d culture GCTCTAGCCA (3) 6.8 0.0068 P8 GC+1d culture CGCCACCACA (11) 2.3 0.0023 P8 GC+1d culture GCTCTAGGAA (5) 1.1 0.0011 P8 GC+SHH+1d culture GCTCTAGCCA (3) 4.7 0.0047 P8 GC+SHH+1d culture CGCCACCACA (11) 2.3 0.0023 P8 GC+SHH+1d culture CAGGTGCTTC (2) 1.2 0.0012 3T3 fibroblasts CGCCACCACA (11) 10.5 0.0105 3T3 fibroblasts GCCCCTGCCA (5) 7 0.007 3T3 fibroblasts GCCACTTGGC (6) 3.5 0.0035 3T3 fibroblasts GCTCTAGCCA (3) 3.5 0.0035 E15 cortex CGCCACCACA (11) 4.9 0.0049 E15 cortex GATCCCAAGA (4) 4.9 0.0049 E15 cortex GCTCTAGCCA (3) 4.9 0.0049 P1 cortex CGCCACCACA (11) 4.5 0.0045 P1 cortex GCTCTAGCCA (3) 4.5 0.0045 Hypothalamus GCTCTAGCCA (3) 10.9 0.0109 Hypothalamus GATCCCAAGA (4) 1.8 0.0018 E12.5 retina GTCTGCAAAC (2) 3.8 0.0038 E12.5 retina GCCACTTGGC (6) 1.9 0.0019 E12.5 retina GCTCTAGGAA (5) 1.9 0.0019 E14.5 retina CGCCACCACA (11) 3.6 0.0036 E14.5 retina GATCCCAAGA (4) 1.8 0.0018 E14.5 retina GCTCTAGCCA (3) 1.8 0.0018 E16.5 retina CGCCACCACA (11) 1.8 0.0018 E16.5 retina GCTCTAGCCA (3) 1.8 0.0018 E18.5 retina CGCCACCACA (11) 3.6 0.0036 E18.5 retina AACAAGCTCT (3) 1.8 0.0018 E18.5 retina GCCACTTGGC (6) 1.8 0.0018 E18.5 retina GCTCTAGCCA (3) 1.8 0.0018 P0.5 retina CGCCACCACA (11) 7.9 0.0079 P0.5 retina GCTCTAGCCA (3) 2 0.002 P2.5 retina CGCCACCACA (11) 12.3 0.0123 P2.5 retina GATCCCAAGA (4) 1.8 0.0018 P2.5 retina GCCCCTGCCA (5) 1.8 0.0018 P4.5 retina CGCCACCACA (11) 4 0.004 P4.5 retina GATTCCCAGG (2) 4 0.004 P4.5 retina GCTCTAGGAA (5) 2 0.002 P6.5 retina CGCCACCACA (11) 8.3 0.0083 P6.5 retina AACAAGCTCT (3) 1.7 0.0017 P6.5 retina GATTCCCAGG (2) 1.7 0.0017 P6.5 retina GCCACTTGGC (6) 1.7 0.0017 P6.5 retina GCTCTAGCCA (3) 1.7 0.0017 P6.5 retina GCTCTAGGAA (5) 1.7 0.0017 P6.5 retina GTCTGCAAAC (2) 1.7 0.0017 P10.5 crx- retina AACAAGCTCT (3) 5.6 0.0056 P10.5 crx- retina GCTCTAGCCA (3) 3.7 0.0037 P10.5 crx- retina GCCACTTGGC (6) 1.9 0.0019 Adult retinal CGCCACCACA (11) 5.6 0.0056 Adult retinal AACAAGCTCT (3) 3.7 0.0037 ONL AACAAGCTCT (3) 3.8 0.0038 ONL CGCCACCACA (11) 1.9 0.0019