Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.181061
Phyhipl
phytanoyl-CoA hydroxylase interacting protein-like
10
70911
Mm.181061
1200015N20Rik
RIKEN cDNA 1200015N20 gene
10
10 B5.3
71721
Mm.181061
D630013N20Rik
RIKEN cDNA D630013N20 gene
10
319646
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 6 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 58 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AGTTAAATCC
(
6
)
4.9
0.0049
P8 Cb GC
GGGTTTGGAG (
4
)
4.9
0.0049
P8 Cb GC
CGGTTTGGAG
(
3
)
1.6
0.0016
Cb medulloblastoma
AGTTAAATCC
(
6
)
6.9
0.0069
Cb medulloblastoma
CAAAGAAGAC (
7
)
4.6
0.0046
Cb medulloblastoma
ACAGAAAACA
(
7
)
2.3
0.0023
Cb medulloblastoma
GGGTTTGGAG (
4
)
2.3
0.0023
P8 GC+1d culture
GTGTTGAAGA (
8
)
3.4
0.0034
P8 GC+1d culture
AGTTAAATCC
(
6
)
2.3
0.0023
P8 GC+1d culture
GGGTTTGGAG (
4
)
2.3
0.0023
P8 GC+1d culture
CGGTTTGGAG
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GTGTTGAAGA (
8
)
4.7
0.0047
P8 GC+SHH+1d culture
GGGTTTGGAG (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
AGTTAAATCC
(
6
)
1.2
0.0012
3T3 fibroblasts
CAAAGAAGAC (
7
)
3.5
0.0035
E15 cortex
GGCTCACCCC (
8
)
4.9
0.0049
P1 cortex
AGTTAAATCC
(
6
)
9.1
0.0091
P1 cortex
GTGTTGAAGA (
8
)
4.5
0.0045
Hypothalamus
AGTTAAATCC
(
6
)
3.6
0.0036
Hypothalamus
ACAGAAAACA
(
7
)
1.8
0.0018
Hypothalamus
CAAAGAAGAC (
7
)
1.8
0.0018
Hypothalamus
CGGTTTGGAG
(
3
)
1.8
0.0018
Hypothalamus
GGGTTTGGAG (
4
)
1.8
0.0018
E12.5 retina
GTGTTGAAGA (
8
)
3.8
0.0038
E12.5 retina
GGGTTTGGAG (
4
)
1.9
0.0019
E14.5 retina
CAAAGAAGAC (
7
)
1.8
0.0018
E14.5 retina
GGCTCACCCC (
8
)
1.8
0.0018
E16.5 retina
GGGTTTGGAG (
4
)
3.6
0.0036
E16.5 retina
GTGTTGAAGA (
8
)
1.8
0.0018
E18.5 retina
GGGTTTGGAG (
4
)
9.1
0.0091
E18.5 retina
AGTTAAATCC
(
6
)
3.6
0.0036
E18.5 retina
CGGTTTGGAG
(
3
)
1.8
0.0018
E18.5 retina
GTGTTGAAGA (
8
)
1.8
0.0018
P0.5 retina
GGGTTTGGAG (
4
)
7.9
0.0079
P0.5 retina
GTGTTGAAGA (
8
)
7.9
0.0079
P0.5 retina
AGTTAAATCC
(
6
)
2
0.002
P2.5 retina
GGGTTTGGAG (
4
)
12.3
0.0123
P2.5 retina
GTGTTGAAGA (
8
)
1.8
0.0018
P4.5 retina
GGGTTTGGAG (
4
)
19.8
0.0198
P4.5 retina
CAAAGAAGAC (
7
)
2
0.002
P4.5 retina
GGCTCACCCC (
8
)
2
0.002
P4.5 retina
GTGTTGAAGA (
8
)
2
0.002
P6.5 retina
GTGTTGAAGA (
8
)
8.3
0.0083
P6.5 retina
AGTTAAATCC
(
6
)
6.7
0.0067
P10.5 crx- retina
GGGTTTGGAG (
4
)
5.6
0.0056
P10.5 crx- retina
AGTTAAATCC
(
6
)
3.7
0.0037
P10.5 crx- retina
GTGTTGAAGA (
8
)
3.7
0.0037
P10.5 crx- retina
CAAAGAAGAC (
7
)
1.9
0.0019
P10.5 crx+ retina
GTGTTGAAGA (
8
)
5.8
0.0058
P10.5 crx+ retina
ACAGAAAACA
(
7
)
1.9
0.0019
P10.5 crx+ retina
AGTTAAATCC
(
6
)
1.9
0.0019
P10.5 crx+ retina
CAAAGAAGAC (
7
)
1.9
0.0019
Adult retinal
GTGTTGAAGA (
8
)
5.6
0.0056
Adult retinal
CAAAGAAGAC (
7
)
1.9
0.0019
ONL
GTGTTGAAGA (
8
)
15.3
0.0153
ONL
GGGTTTGGAG (
4
)
3.8
0.0038
ONL
AGTTAAATCC
(
6
)
1.9
0.0019
ONL
CAAAGAAGAC (
7
)
1.9
0.0019
