Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.181661
Setdb1
SET domain, bifurcated 1
3
84505
Mm.181661
C77070
expressed sequence C77070
3
97053
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 107 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGTGTGTGTG (
115
)
27.7
0.0277
P8 Cb GC
ACTGTGTCAG
(
4
)
6.5
0.0065
P8 Cb GC
GGCAGATAGG (
3
)
6.5
0.0065
P8 Cb GC
GTTCCTAGGA
(
6
)
3.3
0.0033
P8 Cb GC
TTTTATTTAA
(
17
)
3.3
0.0033
P8 Cb GC
TGAATAATGA (
4
)
1.6
0.0016
Cb medulloblastoma
GGCAGATAGG (
3
)
30.1
0.0301
Cb medulloblastoma
TGTGTGTGTG (
115
)
30.1
0.0301
Cb medulloblastoma
ACTGTGTCAG
(
4
)
9.2
0.0092
Cb medulloblastoma
GGATGCTGTC
(
8
)
2.3
0.0023
Cb medulloblastoma
TTTTATTTAA
(
17
)
2.3
0.0023
P8 GC+1d culture
TGTGTGTGTG (
115
)
27.4
0.0274
P8 GC+1d culture
GTTCCTAGGA
(
6
)
4.6
0.0046
P8 GC+1d culture
GGCAGATAGG (
3
)
3.4
0.0034
P8 GC+1d culture
TTTTATTTAA
(
17
)
3.4
0.0034
P8 GC+1d culture
ACTGTGTCAG
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
TGTGTGTGTG (
115
)
28.1
0.0281
P8 GC+SHH+1d culture
GGCAGATAGG (
3
)
5.9
0.0059
P8 GC+SHH+1d culture
GATGCTGTCA (
5
)
3.5
0.0035
P8 GC+SHH+1d culture
GTTCCTAGGA
(
6
)
3.5
0.0035
P8 GC+SHH+1d culture
ACTGTGTCAG
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
GGATGCTGTC
(
8
)
2.3
0.0023
P8 GC+SHH+1d culture
GGCTGTGTAT
(
7
)
2.3
0.0023
P8 GC+SHH+1d culture
TTTTATTTAA
(
17
)
2.3
0.0023
3T3 fibroblasts
TGTGTGTGTG (
115
)
28
0.028
3T3 fibroblasts
TGTCAAAGCT (
3
)
3.5
0.0035
E15 cortex
GATGCTGTCA (
5
)
4.9
0.0049
E15 cortex
GGATGCTGTC
(
8
)
4.9
0.0049
P1 cortex
TGTGTGTGTG (
115
)
18.2
0.0182
P1 cortex
TTTTATTTAA
(
17
)
9.1
0.0091
P1 cortex
GATGCTGTCA (
5
)
4.5
0.0045
P1 cortex
TGAATAATGA (
4
)
4.5
0.0045
Hypothalamus
TGTGTGTGTG (
115
)
25.4
0.0254
Hypothalamus
GGCAGATAGG (
3
)
9.1
0.0091
Hypothalamus
ACTGTGTCAG
(
4
)
5.4
0.0054
Hypothalamus
GATGCTGTCA (
5
)
1.8
0.0018
Hypothalamus
GGCTGTGTAT
(
7
)
1.8
0.0018
Hypothalamus
GTTCCTAGGA
(
6
)
1.8
0.0018
Hypothalamus
TGAATAATGA (
4
)
1.8
0.0018
Hypothalamus
TTTTATTTAA
(
17
)
1.8
0.0018
E12.5 retina
TGTGTGTGTG (
115
)
43.2
0.0432
E12.5 retina
TTTTATTTAA
(
17
)
11.3
0.0113
E12.5 retina
TGAATAATGA (
4
)
3.8
0.0038
E12.5 retina
ACTGTGTCAG
(
4
)
1.9
0.0019
E14.5 retina
TGTGTGTGTG (
115
)
54.7
0.0547
E14.5 retina
ACTGTGTCAG
(
4
)
7.3
0.0073
E14.5 retina
GGCAGATAGG (
3
)
5.5
0.0055
E14.5 retina
TTTTATTTAA
(
17
)
3.6
0.0036
E14.5 retina
GTTCCTAGGA
(
6
)
1.8
0.0018
E14.5 retina
TGAATAATGA (
4
)
1.8
0.0018
E14.5 retina
TGTCAAAGCT (
3
)
1.8
0.0018
E16.5 retina
TGTGTGTGTG (
115
)
39.8
0.0398
E16.5 retina
ACTGTGTCAG
(
4
)
3.6
0.0036
E16.5 retina
TGTCAAAGCT (
3
)
3.6
0.0036
E16.5 retina
TGAATAATGA (
4
)
1.8
0.0018
E18.5 retina
TGTGTGTGTG (
115
)
47.3
0.0473
E18.5 retina
ACTGTGTCAG
(
4
)
5.5
0.0055
E18.5 retina
TTTTATTTAA
(
17
)
3.6
0.0036
E18.5 retina
GGCAGATAGG (
3
)
1.8
0.0018
P0.5 retina
TGTGTGTGTG (
115
)
21.6
0.0216
P0.5 retina
GGCTGTGTAT
(
7
)
3.9
0.0039
P0.5 retina
GTTCCTAGGA
(
6
)
3.9
0.0039
P0.5 retina
TGAATAATGA (
4
)
3.9
0.0039
P0.5 retina
ACTGTGTCAG
(
4
)
2
0.002
P0.5 retina
GATGCTGTCA (
5
)
2
0.002
P0.5 retina
GGCAGATAGG (
3
)
2
0.002
P0.5 retina
TTTTATTTAA
(
17
)
2
0.002
P2.5 retina
TGTGTGTGTG (
115
)
35.2
0.0352
P2.5 retina
GGCAGATAGG (
3
)
3.5
0.0035
P2.5 retina
ACTGTGTCAG
(
4
)
1.8
0.0018
P2.5 retina
TTTTATTTAA
(
17
)
1.8
0.0018
P4.5 retina
TGTGTGTGTG (
115
)
47.6
0.0476
P4.5 retina
TTTTATTTAA
(
17
)
13.9
0.0139
P4.5 retina
GATGCTGTCA (
5
)
5.9
0.0059
P4.5 retina
TGAATAATGA (
4
)
5.9
0.0059
P4.5 retina
GGCAGATAGG (
3
)
4
0.004
P4.5 retina
ACTGTGTCAG
(
4
)
2
0.002
P4.5 retina
GGCTGTGTAT
(
7
)
2
0.002
P6.5 retina
TGTGTGTGTG (
115
)
41.7
0.0417
P6.5 retina
TTTTATTTAA
(
17
)
6.7
0.0067
P6.5 retina
ACTGTGTCAG
(
4
)
3.3
0.0033
P6.5 retina
GATGCTGTCA (
5
)
3.3
0.0033
P6.5 retina
GTTCCTAGGA
(
6
)
3.3
0.0033
P6.5 retina
GGCAGATAGG (
3
)
1.7
0.0017
P6.5 retina
TGAATAATGA (
4
)
1.7
0.0017
P10.5 crx- retina
TGTGTGTGTG (
115
)
59.4
0.0594
P10.5 crx- retina
GGCAGATAGG (
3
)
1.9
0.0019
P10.5 crx- retina
GTTCCTAGGA
(
6
)
1.9
0.0019
P10.5 crx- retina
TGAATAATGA (
4
)
1.9
0.0019
P10.5 crx- retina
TTTTATTTAA
(
17
)
1.9
0.0019
P10.5 crx+ retina
TGTGTGTGTG (
115
)
44.2
0.0442
P10.5 crx+ retina
ACTGTGTCAG
(
4
)
9.6
0.0096
P10.5 crx+ retina
GGCAGATAGG (
3
)
7.7
0.0077
P10.5 crx+ retina
GATGCTGTCA (
5
)
3.8
0.0038
P10.5 crx+ retina
TGAATAATGA (
4
)
1.9
0.0019
P10.5 crx+ retina
TTTTATTTAA
(
17
)
1.9
0.0019
Adult retinal
TGTGTGTGTG (
115
)
53.7
0.0537
Adult retinal
GGCAGATAGG (
3
)
3.7
0.0037
Adult retinal
GTTCCTAGGA
(
6
)
3.7
0.0037
Adult retinal
ACTGTGTCAG
(
4
)
1.9
0.0019
Adult retinal
GATGCTGTCA (
5
)
1.9
0.0019
Adult retinal
TGTCAAAGCT (
3
)
1.9
0.0019
ONL
TGTGTGTGTG (
115
)
23
0.023
ONL
ACTGTGTCAG
(
4
)
3.8
0.0038
ONL
TGAATAATGA (
4
)
3.8
0.0038
ONL
GATGCTGTCA (
5
)
1.9
0.0019
ONL
GTTCCTAGGA
(
6
)
1.9
0.0019
