Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.184163	Raf1	v-raf-1 leukemia viral oncogene 1	6	6 52.5 cM	110157
Gene Ontology	ATP binding | cell growth and/or maintenance | cytosol | diacylglycerol binding | intracellular | intracellular signaling cascade | kinase activity | plasma membrane | protein amino acid phosphorylation | protein binding | protein kinase activity | protein kinase cascade | protein serine/threonine kinase activity | receptor signaling protein activity | regulation of cell cycle | signal transduction | transferase activity
Human Homolog	RAF1[v-raf-1 murine leukemia viral oncogene homolog 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 117 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGACCCTGTC (35) 6.5 0.0065 P8 Cb GC TTCAGGGCGG (2) 3.3 0.0033 P8 Cb GC AAGTCCTGGC (6) 1.6 0.0016 P8 Cb GC GAAAAATATT (7) 1.6 0.0016 P8 Cb GC GAGTCCTGGC (9) 1.6 0.0016 P8 Cb GC TGGACAGCAG (5) 1.6 0.0016 Cb medulloblastoma AGACCCTGTC (35) 20.8 0.0208 Cb medulloblastoma AACTGCAGAG (6) 11.6 0.0116 Cb medulloblastoma AAGTCCTGGC (6) 9.2 0.0092 Cb medulloblastoma TTCAGGGCGG (2) 4.6 0.0046 Cb medulloblastoma ACCAAGGACA (5) 2.3 0.0023 P8 GC+1d culture TTCAGGGCGG (2) 14.8 0.0148 P8 GC+1d culture AACTGCAGAG (6) 5.7 0.0057 P8 GC+1d culture AGACCCTGTC (35) 4.6 0.0046 P8 GC+1d culture GAAAAATATT (7) 3.4 0.0034 P8 GC+1d culture ATCCAAAAAA (6) 2.3 0.0023 P8 GC+1d culture GAGTCCTGGC (9) 2.3 0.0023 P8 GC+1d culture AAGTCCTGGC (6) 1.1 0.0011 P8 GC+SHH+1d culture TTCAGGGCGG (2) 5.9 0.0059 P8 GC+SHH+1d culture GAGTCCTGGC (9) 4.7 0.0047 P8 GC+SHH+1d culture AACTGCAGAG (6) 3.5 0.0035 P8 GC+SHH+1d culture ATCCAAAAAA (6) 3.5 0.0035 P8 GC+SHH+1d culture GAAAAATATT (7) 2.3 0.0023 P8 GC+SHH+1d culture AAGTCCTGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture ACCAAGGACA (5) 1.2 0.0012 P8 GC+SHH+1d culture AGACCCTGTC (35) 1.2 0.0012 P8 GC+SHH+1d culture TGCAAAACTG (2) 1.2 0.0012 3T3 fibroblasts TTCAGGGCGG (2) 14 0.014 3T3 fibroblasts GAGTCCTGGC (9) 7 0.007 3T3 fibroblasts AAGTCCTGGC (6) 3.5 0.0035 E15 cortex AGACCCTGTC (35) 14.8 0.0148 E15 cortex GAGTCCTGGC (9) 9.9 0.0099 E15 cortex AACTGCAGAG (6) 4.9 0.0049 E15 cortex TTCAGGGCGG (2) 4.9 0.0049 P1 cortex TTCAGGGCGG (2) 13.6 0.0136 P1 cortex AACTGCAGAG (6) 9.1 0.0091 P1 cortex GAAAAATATT (7) 9.1 0.0091 P1 cortex GAGTCCTGGC (9) 9.1 0.0091 P1 cortex AGACCCTGTC (35) 4.5 0.0045 Hypothalamus GAAAAATATT (7) 10.9 0.0109 Hypothalamus TTCAGGGCGG (2) 7.2 0.0072 Hypothalamus AACTGCAGAG (6) 3.6 0.0036 Hypothalamus AAGTCCTGGC (6) 3.6 0.0036 Hypothalamus ACCAAGGACA (5) 1.8 0.0018 Hypothalamus AGACCCTGTC (35) 1.8 0.0018 Hypothalamus ATCCAAAAAA (6) 1.8 0.0018 Hypothalamus GAGTCCTGGC (9) 1.8 0.0018 E12.5 retina AGACCCTGTC (35) 5.6 0.0056 E12.5 retina GAGTCCTGGC (9) 5.6 0.0056 E12.5 retina AACTGCAGAG (6) 3.8 0.0038 E12.5 retina TTCAGGGCGG (2) 3.8 0.0038 E12.5 retina ATCCAAAAAA (6) 1.9 0.0019 E12.5 retina GAAAAATATT (7) 1.9 0.0019 E14.5 retina TTCAGGGCGG (2) 9.1 0.0091 E14.5 retina AGACCCTGTC (35) 5.5 0.0055 E14.5 retina GAAAAATATT (7) 5.5 0.0055 E14.5 retina AACTGCAGAG (6) 1.8 0.0018 E16.5 retina TTCAGGGCGG (2) 9.1 0.0091 E16.5 retina AACTGCAGAG (6) 5.4 0.0054 E16.5 retina AGACCCTGTC (35) 3.6 0.0036 E16.5 retina ACCAAGGACA (5) 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina GAAAAATATT (7) 1.8 0.0018 E16.5 retina GAGTCCTGGC (9) 1.8 0.0018 E18.5 retina AGACCCTGTC (35) 10.9 0.0109 E18.5 retina GAAAAATATT (7) 10.9 0.0109 E18.5 retina TTCAGGGCGG (2) 3.6 0.0036 E18.5 retina AACTGCAGAG (6) 1.8 0.0018 E18.5 retina ATCCAAAAAA (6) 1.8 0.0018 E18.5 retina GAGTCCTGGC (9) 1.8 0.0018 E18.5 retina TGCAAAACTG (2) 1.8 0.0018 P0.5 retina TTCAGGGCGG (2) 19.6 0.0196 P0.5 retina GAGTCCTGGC (9) 11.8 0.0118 P0.5 retina AACTGCAGAG (6) 3.9 0.0039 P0.5 retina AAGTCCTGGC (6) 2 0.002 P0.5 retina AGACCCTGTC (35) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina GAAAAATATT (7) 2 0.002 P0.5 retina TGGACAGCAG (5) 2 0.002 P2.5 retina TTCAGGGCGG (2) 15.8 0.0158 P2.5 retina AGACCCTGTC (35) 12.3 0.0123 P2.5 retina AACTGCAGAG (6) 5.3 0.0053 P2.5 retina GAGTCCTGGC (9) 5.3 0.0053 P2.5 retina ATCCAAAAAA (6) 3.5 0.0035 P2.5 retina GAAAAATATT (7) 3.5 0.0035 P2.5 retina TGCAAAACTG (2) 1.8 0.0018 P4.5 retina TTCAGGGCGG (2) 19.8 0.0198 P4.5 retina AACTGCAGAG (6) 11.9 0.0119 P4.5 retina GAAAAATATT (7) 9.9 0.0099 P4.5 retina AGACCCTGTC (35) 7.9 0.0079 P4.5 retina AAGTCCTGGC (6) 2 0.002 P4.5 retina ATCCAAAAAA (6) 2 0.002 P6.5 retina TTCAGGGCGG (2) 53.4 0.0534 P6.5 retina AGACCCTGTC (35) 6.7 0.0067 P6.5 retina GAGTCCTGGC (9) 6.7 0.0067 P6.5 retina AACTGCAGAG (6) 5 0.005 P6.5 retina GAAAAATATT (7) 1.7 0.0017 P6.5 retina TGGACAGCAG (5) 1.7 0.0017 P10.5 crx- retina TTCAGGGCGG (2) 26 0.026 P10.5 crx- retina AACTGCAGAG (6) 14.9 0.0149 P10.5 crx- retina GAAAAATATT (7) 7.4 0.0074 P10.5 crx- retina AAGTCCTGGC (6) 3.7 0.0037 P10.5 crx- retina GAGTCCTGGC (9) 3.7 0.0037 P10.5 crx- retina AGACCCTGTC (35) 1.9 0.0019 P10.5 crx+ retina TTCAGGGCGG (2) 32.7 0.0327 P10.5 crx+ retina AACTGCAGAG (6) 11.5 0.0115 P10.5 crx+ retina AGACCCTGTC (35) 11.5 0.0115 P10.5 crx+ retina GAAAAATATT (7) 3.8 0.0038 P10.5 crx+ retina AAGTCCTGGC (6) 1.9 0.0019 Adult retinal TTCAGGGCGG (2) 31.5 0.0315 Adult retinal AGACCCTGTC (35) 13 0.013 Adult retinal GAGTCCTGGC (9) 9.3 0.0093 Adult retinal ATTACGCCAA (233) 3.7 0.0037 ONL AGACCCTGTC (35) 17.2 0.0172 ONL GAAAAATATT (7) 11.5 0.0115 ONL TTCAGGGCGG (2) 5.7 0.0057 ONL AACTGCAGAG (6) 3.8 0.0038