Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.18516	H3f3b	H3 histone, family 3B	11	11 E2	15081
Gene Ontology	chromosome | DNA binding | nucleosome | nucleus
Human Homolog	H3F3B[H3 histone, family 3B (H3.3B)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAGTAAGAA 71.8 0.0718 P8 Cb GC TTTCTGTATG 47.3 0.0473 P8 Cb GC TTTATAAACT (2) 11.4 0.0114 P8 Cb GC AAAAGCAAAA 9.8 0.0098 P8 Cb GC AAAAGCAAGA (2) 9.8 0.0098 P8 Cb GC CCCAAAGACA 8.2 0.0082 P8 Cb GC TTTCTTGTTT (2) 4.9 0.0049 P8 Cb GC ATGGTGACTC 1.6 0.0016 P8 Cb GC TGGTAGAATG 1.6 0.0016 P8 Cb GC TTCACTAACC 1.6 0.0016 Cb medulloblastoma GGAGTAAGAA 41.6 0.0416 Cb medulloblastoma AAAAGCAAAA 9.2 0.0092 Cb medulloblastoma TTTCTGTATG 6.9 0.0069 Cb medulloblastoma TTTATAAACT (2) 4.6 0.0046 Cb medulloblastoma TGTCTGTATG 2.3 0.0023 P8 GC+1d culture GGAGTAAGAA 107.3 0.1073 P8 GC+1d culture TTTCTGTATG 74.2 0.0742 P8 GC+1d culture AAAAGCAAGA (2) 10.3 0.0103 P8 GC+1d culture CCCAAAGACA 8 0.008 P8 GC+1d culture TTTATAAACT (2) 4.6 0.0046 P8 GC+1d culture TGGTAGAATG 3.4 0.0034 P8 GC+1d culture TTTCTTGTTT (2) 2.3 0.0023 P8 GC+1d culture AAAAGCAAAA 1.1 0.0011 P8 GC+1d culture ATGGTGACTC 1.1 0.0011 P8 GC+1d culture GGAGTAAGGA (2) 1.1 0.0011 P8 GC+SHH+1d culture GGAGTAAGAA 106.6 0.1066 P8 GC+SHH+1d culture TTTCTGTATG 34 0.034 P8 GC+SHH+1d culture TTTATAAACT (2) 12.9 0.0129 P8 GC+SHH+1d culture CCCAAAGACA 5.9 0.0059 P8 GC+SHH+1d culture AAAAGCAAAA 2.3 0.0023 P8 GC+SHH+1d culture AAAAGCAAGA (2) 2.3 0.0023 P8 GC+SHH+1d culture ATGGTGACTC 2.3 0.0023 P8 GC+SHH+1d culture TTCACTAACC 2.3 0.0023 P8 GC+SHH+1d culture GGAGTAAGGA (2) 1.2 0.0012 P8 GC+SHH+1d culture GTTTCTGCAT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTTTTAGAAT 1.2 0.0012 P8 GC+SHH+1d culture TGGTAGAATG 1.2 0.0012 P8 GC+SHH+1d culture TTCCTGTATG 1.2 0.0012 3T3 fibroblasts GGAGTAAGAA 7 0.007 3T3 fibroblasts ATGGTGACTC 3.5 0.0035 3T3 fibroblasts TTTCTGTATG 3.5 0.0035 E15 cortex GCTGCCCTTA 4.9 0.0049 E15 cortex GGAGTAAGAA 4.9 0.0049 P1 cortex TTTCTGTATG 18.2 0.0182 P1 cortex GGAGTAAGAA 13.6 0.0136 P1 cortex AAAAGCAAGA (2) 4.5 0.0045 P1 cortex GCTGCCCTTA 4.5 0.0045 P1 cortex TGGTAGAATG 4.5 0.0045 P1 cortex TTTCTTGTTT (2) 4.5 0.0045 Hypothalamus GGAGTAAGAA 9.1 0.0091 Hypothalamus TTTCTGTATG 5.4 0.0054 Hypothalamus AAAAGCAAGA (2) 3.6 0.0036 Hypothalamus TTTATAAACT (2) 3.6 0.0036 Hypothalamus TTTTTGTATG 3.6 0.0036 Hypothalamus TTCACTAACC 1.8 0.0018 E12.5 retina GGAGTAAGAA 35.7 0.0357 E12.5 retina TTTCTGTATG 22.5 0.0225 E12.5 retina AAAAGCAAGA (2) 9.4 0.0094 E12.5 retina CCCAAAGACA 7.5 0.0075 E12.5 retina TTTATAAACT (2) 5.6 0.0056 E12.5 retina AAAAGCAAAA 1.9 0.0019 E12.5 retina ATGGTGACTC 1.9 0.0019 E12.5 retina GTTTTAGAAT 1.9 0.0019 E12.5 retina TGGTAGAATG 1.9 0.0019 E14.5 retina GGAGTAAGAA 56.5 0.0565 E14.5 retina TTTCTGTATG 12.8 0.0128 E14.5 retina TTTCTTGTTT (2) 9.1 0.0091 E14.5 retina ATGGTGACTC 5.5 0.0055 E14.5 retina CCCAAAGACA 5.5 0.0055 E14.5 retina AAAAGCAAGA (2) 3.6 0.0036 E14.5 retina TTTATAAACT (2) 3.6 0.0036 E14.5 retina TTCACTAACC 1.8 0.0018 E16.5 retina GGAGTAAGAA 94.2 0.0942 E16.5 retina TTTCTGTATG 25.4 0.0254 E16.5 retina TTTATAAACT (2) 10.9 0.0109 E16.5 retina AAAAGCAAGA (2) 9.1 0.0091 E16.5 retina CCCAAAGACA 7.2 0.0072 E16.5 retina ATGGTGACTC 5.4 0.0054 E16.5 retina GGAGTAAGAC 1.8 0.0018 E16.5 retina GTTTTAGAAT 1.8 0.0018 E16.5 retina TTTCTTGTTT (2) 1.8 0.0018 E18.5 retina GGAGTAAGAA 40 0.04 E18.5 retina TTTCTGTATG 30.9 0.0309 E18.5 retina TTTATAAACT (2) 7.3 0.0073 E18.5 retina AAAAGCAAGA (2) 3.6 0.0036 E18.5 retina GTTTTAGAAT 3.6 0.0036 E18.5 retina ATGGTGACTC 1.8 0.0018 E18.5 retina GGAGTAAGAC 1.8 0.0018 E18.5 retina TGTCTGTATG 1.8 0.0018 E18.5 retina TTTCTTGTTT (2) 1.8 0.0018 P0.5 retina GGAGTAAGAA 113.8 0.1138 P0.5 retina TTTCTGTATG 66.7 0.0667 P0.5 retina TTTATAAACT (2) 17.7 0.0177 P0.5 retina AAAAGCAAGA (2) 11.8 0.0118 P0.5 retina ATGGTGACTC 3.9 0.0039 P0.5 retina CCCAAAGACA 3.9 0.0039 P0.5 retina GGAGTAAGGA (2) 3.9 0.0039 P0.5 retina TTCCTGTATG 3.9 0.0039 P0.5 retina AAAAGCAAAA 2 0.002 P0.5 retina GTTTTAGAAT 2 0.002 P0.5 retina TGTCTGTATG 2 0.002 P0.5 retina TTTCTTGTTT (2) 2 0.002 P0.5 retina TTTTTGTATG 2 0.002 P2.5 retina GGAGTAAGAA 100.3 0.1003 P2.5 retina TTTCTGTATG 51 0.051 P2.5 retina AAAAGCAAGA (2) 14.1 0.0141 P2.5 retina TTTATAAACT (2) 7 0.007 P2.5 retina TTTCTTGTTT (2) 3.5 0.0035 P2.5 retina CCCAAAGACA 1.8 0.0018 P2.5 retina GCTGCCCTTA 1.8 0.0018 P2.5 retina TGGTAGAATG 1.8 0.0018 P2.5 retina TTCACTAACC 1.8 0.0018 P4.5 retina GGAGTAAGAA 73.3 0.0733 P4.5 retina TTTCTGTATG 23.8 0.0238 P4.5 retina TTTATAAACT (2) 4 0.004 P4.5 retina AAAAGCAAGA (2) 2 0.002 P4.5 retina CCCAAAGACA 2 0.002 P4.5 retina GGAGTAAGAC 2 0.002 P4.5 retina GTTTCTGCAT (2) 2 0.002 P4.5 retina TGGTAGAATG 2 0.002 P6.5 retina GGAGTAAGAA 118.4 0.1184 P6.5 retina TTTCTGTATG 66.7 0.0667 P6.5 retina TTTATAAACT (2) 16.7 0.0167 P6.5 retina AAAAGCAAGA (2) 13.3 0.0133 P6.5 retina ATGGTGACTC 5 0.005 P6.5 retina CCCAAAGACA 5 0.005 P6.5 retina TTCACTAACC 5 0.005 P6.5 retina TGGTAGAATG 3.3 0.0033 P6.5 retina TTTCTTGTTT (2) 3.3 0.0033 P6.5 retina GCTGCCCTTA 1.7 0.0017 P10.5 crx- retina GGAGTAAGAA 169.1 0.1691 P10.5 crx- retina TTTCTGTATG 40.9 0.0409 P10.5 crx- retina CCCAAAGACA 7.4 0.0074 P10.5 crx- retina AAAAGCAAGA (2) 5.6 0.0056 P10.5 crx- retina TTTATAAACT (2) 5.6 0.0056 P10.5 crx- retina GGAGTAAGAC 1.9 0.0019 P10.5 crx- retina TGGTAGAATG 1.9 0.0019 P10.5 crx- retina TTTCTTGTTT (2) 1.9 0.0019 P10.5 crx+ retina GGAGTAAGAA 61.5 0.0615 P10.5 crx+ retina TTTCTGTATG 21.1 0.0211 P10.5 crx+ retina TTTATAAACT (2) 17.3 0.0173 P10.5 crx+ retina CCCAAAGACA 9.6 0.0096 P10.5 crx+ retina AAAAGCAAGA (2) 3.8 0.0038 P10.5 crx+ retina TGGTAGAATG 1.9 0.0019 Adult retinal GGAGTAAGAA 38.9 0.0389 Adult retinal TTTCTGTATG 27.8 0.0278 Adult retinal AAAAGCAAGA (2) 5.6 0.0056 Adult retinal CCCAAAGACA 3.7 0.0037 Adult retinal ATGGTGACTC 1.9 0.0019 Adult retinal GGAGTAAGAC 1.9 0.0019 Adult retinal TGGTAGAATG 1.9 0.0019 ONL TTTCTGTATG 36.4 0.0364 ONL GGAGTAAGAA 30.6 0.0306 ONL TTTATAAACT (2) 9.6 0.0096 ONL AAAAGCAAGA (2) 7.7 0.0077 ONL TTCACTAACC 3.8 0.0038 ONL CCCAAAGACA 1.9 0.0019 ONL GTTTCTGCAT (2) 1.9 0.0019 ONL TTCCTGTATG 1.9 0.0019 ONL TTTCTTGTTT (2) 1.9 0.0019