Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.19133	Aplp2	amyloid beta (A4) precursor-like protein 2	9	9 13.0 cM	11804
Gene Ontology	binding | DNA binding | extracellular space | integral to membrane | nucleus | protein binding
Human Homolog	APLP2[amyloid beta (A4) precursor-like protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATTGGATC CAAAGTAACT CAGGAGAGAT (2) GCACCGAGTA GGACTTTATT 9.7 0.0097 Cb medulloblastoma AAATTGGATC TCTGACTGAG TTTGTTTTAT (2) 13.8 0.0138 P8 GC+1d culture AAATTGGATC ATTCTGAAAA (3) CACAACCCAG CACTGACCCT GAGGGAGCCA (3) GAGGGAGCCC (6) TGTGAGACAA 18.2 0.0182 P8 GC+SHH+1d culture AAAGTCGATG (2) AAATTGGATC CAAAGTAACT CTGCTGCCCT (5) TGTGAGACAA TTTGTTTTAT (2) 11.9 0.0119 3T3 fibroblasts AAATTGGATC ATTTGATGTG (3) 7 0.007 E15 cortex AAAGTCGATG (2) AAATTGGATC CTGCTGCCCT (5) 14.7 0.0147 P1 cortex AAATTGGATC CTGCTGCCCT (5) 9 0.009 Hypothalamus AAATTGGATC ATTCTGAAAA (3) CAGGAGAGAT (2) GAGGGAGCCA (3) GCTGAGGACC TTTGTTTTAT (2) 16.2 0.0162 E12.5 retina AAATTGGATC CAGGAGAGAT (2) CTGCTGCCCT (5) GAGGGAGCCC (6) GTATTCTCTG GTTCTGCATC TCTGACTGAG TGAAAATTCA TGATTGAGGA 22.7 0.0227 E14.5 retina ATTTGATGTG (3) CAAAGTAACT CTGCTGCCCT (5) GAGGGAGCCA (3) TTTGTTTTAT (2) 10.8 0.0108 E16.5 retina AAATTGGATC CAAAGTAACT CTGCTGCCCT (5) GAGGGAGCCA (3) GTTCTGCATC TCTGACTGAG TTTGTTTTAT (2) 19.8 0.0198 E18.5 retina AAATTGGATC ATTTGATGTG (3) CAAAGTAACT GGACTTTATT TTTGTTTTAT (2) 10.8 0.0108 P0.5 retina AAATTGGATC ATTTGATGTG (3) CTCTATATAA CTGCTGCCCT (5) GAGGGAGCCA (3) GAGGGAGCCC (6) GGACTTTATT GTATTCTCTG TCTGACTGAG 21.8 0.0218 P2.5 retina AAAGTCGATG (2) AAATTGGATC GAGGGAGCCC (6) TCTGACTGAG TGTGAGACAA 10.7 0.0107 P4.5 retina AAATTGGATC CAAAGTAACT CAGGAGAGAT (2) CTGCTGCCCT (5) GAGGGAGCCA (3) TGAAAATTCA 14 0.014 P6.5 retina AAAGTCGATG (2) AAATTGGATC ATTTGATGTG (3) CAGGAGAGAT (2) CTCTATATAA GAGGGAGCCA (3) GAGGGAGCCC (6) TGTGAGACAA 26.7 0.0267 P10.5 crx- retina AAAGTCGATG (2) AAATTGGATC CAAAGTAACT CACAACCCAG CTGCTGCCCT (5) 26.1 0.0261 P10.5 crx+ retina AAATTGGATC ATTTGATGTG (3) CACAACCCAG CACTGACCCT GAGGGAGCCA (3) GCTGAGGACC TGAAAATTCA TGATTGAGGA TTTGTTTTAT (2) 28.7 0.0287 Adult retinal AAATTGGATC ATTCTGAAAA (3) ATTTGATGTG (3) CTGCTGCCCT (5) GAGGGAGCCA (3) GCTGAGGACC GTATTCTCTG TGTGAGACAA 24.3 0.0243 ONL AAAGTCGATG (2) AAATTGGATC ATTTGATGTG (3) CACAACCCAG GAGGGAGCCA (3) GCTGAGGACC GTTCTGCATC TGAAAATTCA TGATTGAGGA 26.7 0.0267