Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.19187	Ptma	prothymosin alpha	1		19231
Gene Ontology	nucleus
Human Homolog	PTMA[prothymosin, alpha (gene sequence 28)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCATTATAA 110.9 0.1109 P8 Cb GC GTCACACCAC 50.6 0.0506 P8 Cb GC GGAGGAAAAA 34.3 0.0343 P8 Cb GC TCAGACGCGG 9.8 0.0098 P8 Cb GC GGAAGGAAAA 1.6 0.0016 P8 Cb GC GGGAGGGAAA 1.6 0.0016 P8 Cb GC TCATATCTGT (3) 1.6 0.0016 P8 Cb GC TTCCTTATAA 1.6 0.0016 Cb medulloblastoma GGAGGAAAAA 6.9 0.0069 Cb medulloblastoma TTCATTATAA 4.6 0.0046 Cb medulloblastoma GTCACACCAC 2.3 0.0023 Cb medulloblastoma TTCATAATAA 2.3 0.0023 P8 GC+1d culture TTCATTATAA 84.5 0.0845 P8 GC+1d culture GTCACACCAC 17.1 0.0171 P8 GC+1d culture GGAGGAAAAA 6.8 0.0068 P8 GC+1d culture GGAGGACACA (2) 4.6 0.0046 P8 GC+1d culture TCATATCTGT (3) 3.4 0.0034 P8 GC+1d culture TTCATAATAA 2.3 0.0023 P8 GC+1d culture GGAAGGAAAA 1.1 0.0011 P8 GC+SHH+1d culture TTCATTATAA 112.4 0.1124 P8 GC+SHH+1d culture GGAGGAAAAA 34 0.034 P8 GC+SHH+1d culture GTCACACCAC 23.4 0.0234 P8 GC+SHH+1d culture TCATATCTGT (3) 5.9 0.0059 P8 GC+SHH+1d culture TTCATAATAA 3.5 0.0035 P8 GC+SHH+1d culture GGAGGACACA (2) 2.3 0.0023 P8 GC+SHH+1d culture TCAGACGCGG 2.3 0.0023 P8 GC+SHH+1d culture TTCCTTATAA 2.3 0.0023 P8 GC+SHH+1d culture GGGGAGGGAA (2) 1.2 0.0012 3T3 fibroblasts GTCACACCAC 21 0.021 3T3 fibroblasts TCAGACGCGG 14 0.014 3T3 fibroblasts TTCATTATAA 7 0.007 3T3 fibroblasts GGAGGAAAAA 3.5 0.0035 3T3 fibroblasts TCATATCTGT (3) 3.5 0.0035 E15 cortex TCAGACGCGG 69.3 0.0693 E15 cortex GGAGGAAAAA 14.8 0.0148 E15 cortex GTCACACCAC 14.8 0.0148 E15 cortex GGGGAGGGAA (2) 4.9 0.0049 E15 cortex TCATATCTGT (3) 4.9 0.0049 P1 cortex GTCACACCAC 50 0.05 P1 cortex TTCATTATAA 45.5 0.0455 P1 cortex GGAGGAAAAA 4.5 0.0045 P1 cortex TCATATCTGT (3) 4.5 0.0045 P1 cortex TTCATAATAA 4.5 0.0045 Hypothalamus TTCATTATAA 14.5 0.0145 Hypothalamus GGAGGAAAAA 3.6 0.0036 E12.5 retina TTCATTATAA 84.5 0.0845 E12.5 retina GTCACACCAC 50.7 0.0507 E12.5 retina GGAGGAAAAA 20.7 0.0207 E12.5 retina TCATATCTGT (3) 5.6 0.0056 E12.5 retina GCTCACACCA (2) 1.9 0.0019 E12.5 retina TCAGACGCGG 1.9 0.0019 E12.5 retina TTCCTTATAA 1.9 0.0019 E14.5 retina TTCATTATAA 52.8 0.0528 E14.5 retina GCTCACACCA (2) 5.5 0.0055 E14.5 retina GTCACACCAC 5.5 0.0055 E14.5 retina CGCTCTCCAC 3.6 0.0036 E14.5 retina GGAGGAAAAA 1.8 0.0018 E14.5 retina GGAGGACACA (2) 1.8 0.0018 E14.5 retina TCAGACGCGG 1.8 0.0018 E14.5 retina TCATATCTGT (3) 1.8 0.0018 E16.5 retina TTCATTATAA 48.9 0.0489 E16.5 retina GGAGGAAAAA 7.2 0.0072 E16.5 retina GTCACACCAC 5.4 0.0054 E16.5 retina TCATATCTGT (3) 3.6 0.0036 E16.5 retina CGCTCTCCAC 1.8 0.0018 E16.5 retina GCTCACACCA (2) 1.8 0.0018 E16.5 retina TCAGACGCGG 1.8 0.0018 E16.5 retina TTCCTTATAA 1.8 0.0018 E18.5 retina TTCATTATAA 56.4 0.0564 E18.5 retina GTCACACCAC 25.5 0.0255 E18.5 retina GGAGGAAAAA 21.8 0.0218 E18.5 retina CGCTCTCCAC 3.6 0.0036 E18.5 retina TCAGACGCGG 3.6 0.0036 E18.5 retina GCTCACACCA (2) 1.8 0.0018 E18.5 retina GGAAGGAAAA 1.8 0.0018 P0.5 retina TTCATTATAA 68.7 0.0687 P0.5 retina GTCACACCAC 17.7 0.0177 P0.5 retina GGAGGAAAAA 5.9 0.0059 P0.5 retina TCAGACGCGG 3.9 0.0039 P0.5 retina CGCTCTCCAC 2 0.002 P0.5 retina TCATATCTGT (3) 2 0.002 P0.5 retina TTCCTTATAA 2 0.002 P2.5 retina TTCATTATAA 56.3 0.0563 P2.5 retina GGAGGAAAAA 28.2 0.0282 P2.5 retina GTCACACCAC 15.8 0.0158 P2.5 retina CGCTCTCCAC 3.5 0.0035 P2.5 retina GGAAGGAAAA 1.8 0.0018 P2.5 retina GGGAGGGAAA 1.8 0.0018 P2.5 retina TCATATCTGT (3) 1.8 0.0018 P2.5 retina TTCCTTATAA 1.8 0.0018 P4.5 retina TTCATTATAA 73.3 0.0733 P4.5 retina GGAGGAAAAA 7.9 0.0079 P4.5 retina GTCACACCAC 7.9 0.0079 P4.5 retina GGAAGGAAAA 4 0.004 P4.5 retina TCATATCTGT (3) 4 0.004 P4.5 retina GCTCACACCA (2) 2 0.002 P4.5 retina TCAGACGCGG 2 0.002 P6.5 retina TTCATTATAA 31.7 0.0317 P6.5 retina GGAGGAAAAA 5 0.005 P6.5 retina GTCACACCAC 5 0.005 P6.5 retina GGAGGACACA (2) 1.7 0.0017 P6.5 retina GGGGAGGGAA (2) 1.7 0.0017 P6.5 retina TCATATCTGT (3) 1.7 0.0017 P10.5 crx- retina TTCATTATAA 39 0.039 P10.5 crx- retina GGAGGAAAAA 3.7 0.0037 P10.5 crx- retina GCTCACACCA (2) 1.9 0.0019 P10.5 crx- retina GTCACACCAC 1.9 0.0019 P10.5 crx- retina TCATATCTGT (3) 1.9 0.0019 P10.5 crx+ retina GTCACACCAC 21.1 0.0211 P10.5 crx+ retina TTCATTATAA 13.5 0.0135 P10.5 crx+ retina GGAGGAAAAA 7.7 0.0077 P10.5 crx+ retina GGAAGGAAAA 3.8 0.0038 P10.5 crx+ retina TTCCTTATAA 3.8 0.0038 P10.5 crx+ retina GGGAGGGAAA 1.9 0.0019 Adult retinal TTCATTATAA 7.4 0.0074 Adult retinal CGCTCTCCAC 1.9 0.0019 Adult retinal GGAGGACACA (2) 1.9 0.0019 ONL TTCATTATAA 13.4 0.0134 ONL GGAGGAAAAA 9.6 0.0096 ONL GTCACACCAC 3.8 0.0038