Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.196544	Kars	lysyl-tRNA synthetase	8	8 55.0 cM	85305
Gene Ontology	ATP binding | intracellular | ligase activity | lysine-tRNA ligase activity | lysyl-tRNA aminoacylation | nucleic acid binding | protein biosynthesis | tRNA aminoacylation for protein translation | tRNA ligase activity
Human Homolog	KARS[lysyl-tRNA synthetase]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 78 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGAAGGGGT CAACTATGGT CTGCCTTAAT GCCAACTCCA 11.4 0.0114 Cb medulloblastoma CAACTATGGT CTGCCTTAAT 13.8 0.0138 P8 GC+1d culture ACTTGTAACT CAACTATGGT CTGCCTTAAT 9.2 0.0092 P8 GC+SHH+1d culture AAGAAGGGGT AAGCCAGAGG ACTTGTAACT CAACTATGGT CTGCCTTAAT GGGGGAAAAA (3) 24.6 0.0246 3T3 fibroblasts CTGCCTTAAT GTCATAGCTG (2) 17.5 0.0175 E15 cortex CCCCACCCCG CTGCCTTAAT GGGGGAAAAA (3) GTCATAGCTG (2) 24.6 0.0246 P1 cortex CTGCCTTAAT GGGGGAAAAA (3) 9 0.009 Hypothalamus AAGAAGGAGA AAGAAGGGGT CAACTATGGT CTGCCTTAAT GGGGGAAAAA (3) 14.4 0.0144 E12.5 retina CAACTATGGT CCCCACCCCG CTGCCTTAAT 45.1 0.0451 E14.5 retina AAGAAGGAGA AAGAAGGGGT AAGCCAGAGG CAACTATGGT CTGCCTTAAT GCCAACTCCA 38.2 0.0382 E16.5 retina AAGAAGGGGT CAACTATGGT CCCCACCCCG CTGCCTTAAT TGCCTTCTAG 16.2 0.0162 E18.5 retina AAGAAGGAGA CAACTATGGT CTGCCTTAAT GCCAACTCCA GGGGGAAAAA (3) 29.1 0.0291 P0.5 retina CAACTATGGT CTGCCTTAAT GTCATAGCTG (2) 19.6 0.0196 P2.5 retina AAGAAGGGGT CAACTATGGT CTGCCTTAAT GGGGGAAAAA (3) GTCATAGCTG (2) 19.5 0.0195 P4.5 retina CAACTATGGT CCCCACCCCG CTGCCTTAAT GTCATAGCTG (2) TGCCTTCTAG 13.9 0.0139 P6.5 retina CAACTATGGT CTGCCTTAAT GTCATAGCTG (2) 18.3 0.0183 P10.5 crx- retina AAGAAGGGGT CAACTATGGT CTGCCTTAAT 11.2 0.0112 P10.5 crx+ retina CAACTATGGT CTGCCTTAAT 5.7 0.0057 Adult retinal ATGAACACTG (9) CAACTATGGT CTGCCTTAAT GTCATAGCTG (2) 20.5 0.0205 ONL AAGCCAGAGG ATGAACACTG (9) CAACTATGGT CTGCCTTAAT GTCATAGCTG (2) TGCCTTCTAG 34.4 0.0344