Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1970	Ppp1ca	protein phosphatase 1, catalytic subunit, alpha isoform	7		19045
Gene Ontology	branching morphogenesis | cell growth and/or maintenance | CTD phosphatase activity | cytokinesis | cytoplasm | female meiosis | glycogen metabolism | glycogen metabolism | hydrolase activity | lung development | manganese ion binding | metabolism | myosin phosphatase activity | nucleoplasm | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein amino acid dephosphorylation | protein amino acid dephosphorylation | protein binding | protein phosphatase type 1 activity | protein phosphatase type 1 activity | protein phosphatase type 1 activity | protein phosphatase type 2A activity | protein phosphatase type 2C activity | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase activity | regulation of protein biosynthesis
Human Homolog	PPP1CA[protein phosphatase 1, catalytic subunit, alpha isoform]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 155 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGAAAAAAA (3) CAAGGCTGGA (2) CAGCAATGTG (3) GCAGAGTTTT GCTGGCAGCC (2) GGTTTCTTCC TGTTCCTTCC (2) 81.6 0.0816 Cb medulloblastoma AAGAAAAAAA (3) AATTAAGTGG CAAGGCTGGA (2) GCAGAGTTTT GCTGGCAACC GCTGGCAGCC (2) GCTGGCAGGC GTGTTTCCTT (2) 147.9 0.1479 P8 GC+1d culture AAGAAAAAAA (3) CAGCAATGTG (3) GAGGCTATTT (2) GCAGAGTTTT GCTGGCAACC GCTGGCAGCC (2) GCTGGCAGGC GGTCACACTG GGTTTCTTCC GTGTTTCCTT (2) 118.5 0.1185 P8 GC+SHH+1d culture AAGAAAAAAA (3) AGGCCACAGA ATGAGTGTGG (2) CAAGGCTGGA (2) CAGCAATGTG (3) GAGGCTATTT (2) GAGGTGGAAA (3) GCAGAGTTTT GCCTCTGTCT GCTGGCAGCC (2) GGTTTCTTCC TGTTCCTTCC (2) 146.3 0.1463 3T3 fibroblasts CAAGGCTGGA (2) GCTGGCAGCC (2) GGTCACACTG GTGTTTCCTT (2) 77.1 0.0771 E15 cortex AAGAAAAAAA (3) GCAGAGTTTT GCTGGCAGCA (2) GCTGGCAGCC (2) 108.7 0.1087 P1 cortex AAGAAAAAAA (3) GCTGGCAGCC (2) GGTTTCTTCC 31.8 0.0318 Hypothalamus AAGAAAAAAA (3) CAAGGCTGGA (2) CAGCAATGTG (3) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GGTCACACTG TGTTCCTTCC (2) 74.2 0.0742 E12.5 retina AAGAAAAAAA (3) CAAGGCTGGA (2) CAGCAATGTG (3) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GGTTTCTTCC 99.6 0.0996 E14.5 retina AAGAAAAAAA (3) CAAGGCTGGA (2) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAACC GCTGGCAGCA (2) GCTGGCAGCC (2) GGTTTCTTCC GTGTTTCCTT (2) 100.1 0.1001 E16.5 retina AAGAAAAAAA (3) AGGCCACAGA CAAGGCTGGA (2) GAGGTGGAAA (3) GCAGAGTTTT GCCAGTAATA GCTGGCAGCC (2) GGTTTCTTCC TGTTCCTTCC (2) 99.4 0.0994 E18.5 retina AAGAAAAAAA (3) CAAGGCTGGA (2) GAGGCTATTT (2) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GGTTTCTTCC GTGTTTCCTT (2) GTTGGCAGCC (2) TTCAGCCACT 156.3 0.1563 P0.5 retina AAGAAAAAAA (3) AATTAAGTGG CAAGGCTGGA (2) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GGTCACACTG GGTTTCTTCC 80.7 0.0807 P2.5 retina AAGAAAAAAA (3) ATGAGTGTGG (2) CAAGGCTGGA (2) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GGTTTCTTCC GTTGGCAGCC (2) TGTTCCTTCC (2) TTCAGCCACT 107.6 0.1076 P4.5 retina AAGAAAAAAA (3) AATTAAGTGG GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GGTCACACTG GGTTTCTTCC 114.9 0.1149 P6.5 retina AAGAAAAAAA (3) AATTAAGTGG CAAGGCTGGA (2) GAGGTGGAAA (3) GCAGAGTTTT GCTGGCAGCC (2) GCTGGCAGGC GGTCACACTG 78.4 0.0784 P10.5 crx- retina AAGAAAAAAA (3) CAAGGCTGGA (2) GAGGTGGAAA (3) GCAGAGTTTT GCCAGTAATA GCTGGCAGCC (2) GCTGGCAGGC GGTTTCTTCC GTTGGCAGCC (2) 98.6 0.0986 P10.5 crx+ retina AAGAAAAAAA (3) AATTAAGTGG CAAGGCTGGA (2) GCAGAGTTTT GCCTCTGTCT GCTGGCAGCC (2) GCTGGCAGGC 111.4 0.1114 Adult retinal AAGAAAAAAA (3) AATTAAGTGG CAAGGCTGGA (2) GCAGAGTTTT GCCTCTGTCT GCTGGCAGCC (2) GGTTTCTTCC 44.6 0.0446 ONL AAGAAAAAAA (3) AATTAAGTGG CAAGGCTGGA (2) GCCAGTAATA GCTGGCAGCC (2) GCTGGCAGGC GTGTTTCCTT (2) TGTTCCTTCC (2) 24.7 0.0247