Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.19804	Spg4	spastic paraplegia 4 homolog (human)	17		50850
Gene Ontology	ATP binding | ATPase activity | nucleotide binding | nucleus
Human Homolog	SPG4[spastic paraplegia 4 (autosomal dominant; spastin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTGAGAAAA (2) 3.3 0.0033 P8 Cb GC AGCTACGACT (2) 1.6 0.0016 P8 Cb GC TATGTGGCAT 1.6 0.0016 Cb medulloblastoma ACAGAAAACA (7) 2.3 0.0023 Cb medulloblastoma AGCTACGACT (2) 2.3 0.0023 Cb medulloblastoma TATGTGGCAT 2.3 0.0023 P8 GC+1d culture TATGTGGCAT 6.8 0.0068 P8 GC+1d culture TCTGAGAAAA (2) 2.3 0.0023 P8 GC+1d culture CTGGGAGGTG (5) 1.1 0.0011 P8 GC+1d culture GTTTCTGGAG (4) 1.1 0.0011 P8 GC+1d culture TAATTTCAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture GTTTCTGGAG (4) 2.3 0.0023 P8 GC+SHH+1d culture TATGTGGCAT 2.3 0.0023 P8 GC+SHH+1d culture ACAGAGTCCT 1.2 0.0012 P8 GC+SHH+1d culture AGCTACGACT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGAGGCCTTT (3) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TATGTGGCAT 4.5 0.0045 P1 cortex TCTGAGAAAA (2) 4.5 0.0045 Hypothalamus ACAGAAAACA (7) 1.8 0.0018 Hypothalamus TATGTGGCAT 1.8 0.0018 E12.5 retina TATGTGGCAT 3.8 0.0038 E14.5 retina ACAGAGTCCT 1.8 0.0018 E14.5 retina CTGGGAGGTG (5) 1.8 0.0018 E14.5 retina TCTGAGAAAA (2) 1.8 0.0018 E14.5 retina TGAGGCCTTT (3) 1.8 0.0018 E16.5 retina ACAGAGTCCT 1.8 0.0018 E16.5 retina AGCTACGACT (2) 1.8 0.0018 E18.5 retina TATGTGGCAT 5.5 0.0055 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GTTTCTGGAG (4) 3.9 0.0039 P0.5 retina TATGTGGCAT 2 0.002 P2.5 retina CTGGGAGGTG (5) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TATGTGGCAT 1.8 0.0018 P2.5 retina TGAGGCCTTT (3) 1.8 0.0018 P4.5 retina CTGGGAGGTG (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGAGGCCTTT (3) 2 0.002 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TAATTTCAAA (2) 3.3 0.0033 P6.5 retina TCTGAGAAAA (2) 1.7 0.0017 P10.5 crx- retina ACAGAGTCCT 7.4 0.0074 P10.5 crx- retina AGCTACGACT (2) 1.9 0.0019 P10.5 crx+ retina CTGGGAGGTG (5) 3.8 0.0038 P10.5 crx+ retina ACAGAAAACA (7) 1.9 0.0019 P10.5 crx+ retina AGCTACGACT (2) 1.9 0.0019 Adult retinal TATGTGGCAT 3.7 0.0037 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL ACAGAGTCCT 1.9 0.0019 ONL TATGTGGCAT 1.9 0.0019