Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.199964
D10Ertd438e
DNA segment, Chr 10, ERATO Doi 438, expressed
10
10 29.0 cM
52014
Gene Ontology
extracellular space
Human Homolog
C6orf68[chromosome 6 open reading frame 68]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 111 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
GTGGCTCATA (
21
)
22.8
0.0228
P8 Cb GC
CACACACACA (
106
)
11.4
0.0114
P8 Cb GC
ATTCCGAATT (
107
)
1.6
0.0016
P8 Cb GC
GGCAAAAAAA (
17
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
CACACACACA (
106
)
32.4
0.0324
Cb medulloblastoma
GTGGCTCATA (
21
)
23.1
0.0231
Cb medulloblastoma
GGCAAAAAAA (
17
)
11.6
0.0116
Cb medulloblastoma
AGTCTTGTGT (
2
)
4.6
0.0046
Cb medulloblastoma
CTTAGAGTCA
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
GTGGCTCATA (
21
)
26.3
0.0263
P8 GC+1d culture
CACACACACA (
106
)
6.8
0.0068
P8 GC+1d culture
AGTCTTGTGT (
2
)
1.1
0.0011
P8 GC+1d culture
CTTAGAGTCA
1.1
0.0011
P8 GC+1d culture
TTCATTTAGA
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
GTGGCTCATA (
21
)
24.6
0.0246
P8 GC+SHH+1d culture
CACACACACA (
106
)
9.4
0.0094
P8 GC+SHH+1d culture
AGTCTTGTGT (
2
)
3.5
0.0035
P8 GC+SHH+1d culture
GGCAAAAAAA (
17
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
GTGGCTCATA (
21
)
24.5
0.0245
3T3 fibroblasts
CACACACACA (
106
)
17.5
0.0175
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
GTGGCTCATA (
21
)
39.6
0.0396
E15 cortex
CTTAGAGTCA
9.9
0.0099
E15 cortex
CACACACACA (
106
)
4.9
0.0049
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
CACACACACA (
106
)
27.3
0.0273
P1 cortex
GTGGCTCATA (
21
)
27.3
0.0273
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
CACACACACA (
106
)
96
0.096
Hypothalamus
GTGGCTCATA (
21
)
30.8
0.0308
Hypothalamus
AGTCTTGTGT (
2
)
3.6
0.0036
Hypothalamus
CTTAGAGTCA
3.6
0.0036
Hypothalamus
GGCAAAAAAA (
17
)
3.6
0.0036
Hypothalamus
GATGCTTCCT (
4
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
GTGGCTCATA (
21
)
82.6
0.0826
E12.5 retina
AGTCTTGTGT (
2
)
5.6
0.0056
E12.5 retina
CACACACACA (
106
)
3.8
0.0038
E12.5 retina
TTCATTTAGA
(
4
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
GTGGCTCATA (
21
)
49.2
0.0492
E14.5 retina
CACACACACA (
106
)
18.2
0.0182
E14.5 retina
AGTCTTGTGT (
2
)
3.6
0.0036
E14.5 retina
GGCAAAAAAA (
17
)
3.6
0.0036
E14.5 retina
GATGCTTCCT (
4
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
GTGGCTCATA (
21
)
34.4
0.0344
E16.5 retina
CACACACACA (
106
)
12.7
0.0127
E16.5 retina
TGCCATTTTA (
3
)
3.6
0.0036
E16.5 retina
GATGCTTCCT (
4
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
GTGGCTCATA (
21
)
47.3
0.0473
E18.5 retina
CACACACACA (
106
)
5.5
0.0055
E18.5 retina
AGTCTTGTGT (
2
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
GTGGCTCATA (
21
)
41.2
0.0412
P0.5 retina
CACACACACA (
106
)
7.9
0.0079
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
TTCATTTAGA
(
4
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GTGGCTCATA (
21
)
49.3
0.0493
P2.5 retina
CACACACACA (
106
)
21.1
0.0211
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
GTGGCTCATA (
21
)
53.5
0.0535
P4.5 retina
CACACACACA (
106
)
7.9
0.0079
P4.5 retina
AGTCTTGTGT (
2
)
2
0.002
P4.5 retina
ATTCCGAATT (
107
)
2
0.002
P4.5 retina
CTTAGAGTCA
2
0.002
P4.5 retina
GATGCTTCCT (
4
)
2
0.002
P4.5 retina
GGCAAAAAAA (
17
)
2
0.002
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P4.5 retina
TTCATTTAGA
(
4
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GTGGCTCATA (
21
)
33.3
0.0333
P6.5 retina
CACACACACA (
106
)
8.3
0.0083
P6.5 retina
ATTCCGAATT (
107
)
3.3
0.0033
P6.5 retina
CTTAGAGTCA
3.3
0.0033
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P6.5 retina
GGCAAAAAAA (
17
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
GTGGCTCATA (
21
)
33.4
0.0334
P10.5 crx- retina
AGTCTTGTGT (
2
)
11.1
0.0111
P10.5 crx- retina
CACACACACA (
106
)
5.6
0.0056
P10.5 crx- retina
CTTAGAGTCA
1.9
0.0019
P10.5 crx- retina
GGCAAAAAAA (
17
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
GTGGCTCATA (
21
)
38.4
0.0384
P10.5 crx+ retina
CACACACACA (
106
)
7.7
0.0077
P10.5 crx+ retina
GGCAAAAAAA (
17
)
3.8
0.0038
P10.5 crx+ retina
AGTCTTGTGT (
2
)
1.9
0.0019
P10.5 crx+ retina
TGCCATTTTA (
3
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
GTGGCTCATA (
21
)
24.1
0.0241
Adult retinal
CACACACACA (
106
)
16.7
0.0167
Adult retinal
AGTCTTGTGT (
2
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GTGGCTCATA (
21
)
49.8
0.0498
ONL
CACACACACA (
106
)
21.1
0.0211
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
ATTCCGAATT (
107
)
3.8
0.0038
ONL
AGTCTTGTGT (
2
)
1.9
0.0019
ONL
GATGCTTCCT (
4
)
1.9
0.0019
