Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.200188
Nexn
nexilin
3
68810
Human Homolog
NEXN[nexilin (F actin binding protein)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 64 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
GAAATAAATG (
7
)
4.9
0.0049
P8 Cb GC
TAACCCTGGA
1.6
0.0016
P8 Cb GC
TGAGCATACT (
3
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
GAAATAAATG (
7
)
16.2
0.0162
Cb medulloblastoma
TGAGCATACT (
3
)
6.9
0.0069
Cb medulloblastoma
TAACCCTGGA
4.6
0.0046
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
GAAATAAATG (
7
)
6.8
0.0068
P8 GC+1d culture
TGAGCATACT (
3
)
5.7
0.0057
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TGAGCATACT (
3
)
12.9
0.0129
P8 GC+SHH+1d culture
GAAATAAATG (
7
)
11.7
0.0117
P8 GC+SHH+1d culture
TAACCCTGGA
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TGAGCATACT (
3
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
TGAGCATACT (
3
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TGAGCATACT (
3
)
22.7
0.0227
P1 cortex
GAAATAAATG (
7
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
GAAATAAATG (
7
)
10.9
0.0109
Hypothalamus
CAGAGGGCCA
(
4
)
1.8
0.0018
Hypothalamus
TGAGCATACT (
3
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
GAAATAAATG (
7
)
7.5
0.0075
E12.5 retina
TGAGCATACT (
3
)
7.5
0.0075
E12.5 retina
GATGATGAAA
(
5
)
3.8
0.0038
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
GAAATAAATG (
7
)
16.4
0.0164
E14.5 retina
TGAGCATACT (
3
)
7.3
0.0073
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TGAGCATACT (
3
)
10.9
0.0109
E16.5 retina
GAAATAAATG (
7
)
9.1
0.0091
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GAAATAAATG (
7
)
18.2
0.0182
E18.5 retina
GATGATGAAA
(
5
)
7.3
0.0073
E18.5 retina
TGAGCATACT (
3
)
5.5
0.0055
E18.5 retina
CAGAGGGCCA
(
4
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TGAGCATACT (
3
)
11.8
0.0118
P0.5 retina
GAAATAAATG (
7
)
3.9
0.0039
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
GAAATAAATG (
7
)
12.3
0.0123
P2.5 retina
TGAGCATACT (
3
)
5.3
0.0053
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
GAAATAAATG (
7
)
19.8
0.0198
P4.5 retina
TGAGCATACT (
3
)
4
0.004
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GAAATAAATG (
7
)
16.7
0.0167
P6.5 retina
TGAGCATACT (
3
)
8.3
0.0083
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
TGAGCATACT (
3
)
11.1
0.0111
P10.5 crx- retina
GAAATAAATG (
7
)
7.4
0.0074
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TGAGCATACT (
3
)
11.5
0.0115
P10.5 crx+ retina
GAAATAAATG (
7
)
7.7
0.0077
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GAAATAAATG (
7
)
9.3
0.0093
Adult retinal
TGAGCATACT (
3
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
GAAATAAATG (
7
)
11.5
0.0115
