Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.201535	Capn7	calpain 7	14		12339
Gene Ontology	calpain activity | cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | intracellular | nucleus | protein domain specific binding | proteolysis and peptidolysis
Human Homolog	CAPN7[calpain 7]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC TGTGTATAGC 11.4 0.0114 P8 Cb GC GGGACTTGGG (10) 1.6 0.0016 P8 Cb GC GTTGGTAAAT (3) 1.6 0.0016 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma TGTGTATAGC 11.6 0.0116 Cb medulloblastoma TATCCCAGGC (5) 4.6 0.0046 Cb medulloblastoma GAGATGCTCA (4) 2.3 0.0023 Cb medulloblastoma GGGACTTGGG (10) 2.3 0.0023 Cb medulloblastoma GTTGGTAAAT (3) 2.3 0.0023 Cb medulloblastoma GTTTGTGCAC (3) 2.3 0.0023 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture TGTGTATAGC 9.1 0.0091 P8 GC+1d culture GGGACTTGGG (10) 4.6 0.0046 P8 GC+1d culture TATCCCAGGC (5) 1.1 0.0011 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture GAGATGCTCA (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTGGTAAAT (3) 1.2 0.0012 P8 GC+SHH+1d culture TATCCCAGGC (5) 1.2 0.0012 P8 GC+SHH+1d culture TGTGTATAGC 1.2 0.0012 3T3 fibroblasts GGGACTTGGG (10) 3.5 0.0035 3T3 fibroblasts GTTTGTGCAC (3) 3.5 0.0035 E15 cortex GGGACTTGGG (10) 4.9 0.0049 E15 cortex GTTTGTGCAC (3) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex GAGATGCTCA (4) 4.5 0.0045 P1 cortex TGTGTATAGC 4.5 0.0045 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus TGTGTATAGC 3.6 0.0036 Hypothalamus GAGATGCTCA (4) 1.8 0.0018 Hypothalamus GGGACTTGGG (10) 1.8 0.0018 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina GGGACTTGGG (10) 1.9 0.0019 E12.5 retina TATCCCAGGC (5) 1.9 0.0019 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina GTTGGTAAAT (3) 3.6 0.0036 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina GGGACTTGGG (10) 1.8 0.0018 E16.5 retina TGTGTATAGC 1.8 0.0018 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina GGGACTTGGG (10) 3.6 0.0036 E18.5 retina GTTGGTAAAT (3) 1.8 0.0018 E18.5 retina TGTGTATAGC 1.8 0.0018 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina GAGATGCTCA (4) 3.9 0.0039 P0.5 retina GGGACTTGGG (10) 3.9 0.0039 P0.5 retina GTTGGTAAAT (3) 2 0.002 P0.5 retina TATCCCAGGC (5) 2 0.002 P0.5 retina TGTGTATAGC 2 0.002 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina GGGACTTGGG (10) 5.3 0.0053 P2.5 retina TGTGTATAGC 3.5 0.0035 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina GGGACTTGGG (10) 2 0.002 P4.5 retina GTTGGTAAAT (3) 2 0.002 P4.5 retina GTTTGTGCAC (3) 2 0.002 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina GGGACTTGGG (10) 5 0.005 P6.5 retina GTTGGTAAAT (3) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina GTTTGTGCAC (3) 1.9 0.0019 P10.5 crx+ retina GGGACTTGGG (10) 9.6 0.0096 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 Adult retinal GGGACTTGGG (10) 7.4 0.0074 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal GTTTGTGCAC (3) 1.9 0.0019 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL GTTGGTAAAT (3) 1.9 0.0019