Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.202504	Hdac1	histone deacetylase 1	17	4 59.0 cM	15181
Gene Ontology	chromatin modification | endoderm development | endoderm development | heterochromatin | histone deacetylase activity | histone deacetylase complex | hydrolase activity | nucleus | NuRD complex | protein binding | regulation of transcription, DNA-dependent
Human Homolog	HDAC1[histone deacetylase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC AATCACAATT (2) 3.3 0.0033 P8 Cb GC CCCCTGGGGT (6) 3.3 0.0033 P8 Cb GC GTGTCTCACA (8) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GTGTCTCACA (8) 6.9 0.0069 Cb medulloblastoma GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GGGGGAGGGG (18) 2.3 0.0023 P8 GC+1d culture GTGTCTCACA (8) 2.3 0.0023 P8 GC+1d culture GAGAAGGCAT (2) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGTCTCACA (8) 3.5 0.0035 P8 GC+SHH+1d culture CCCCTGGGGT (6) 2.3 0.0023 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts CCCCTGGGGT (6) 14 0.014 3T3 fibroblasts GGGGGAGGGG (18) 3.5 0.0035 3T3 fibroblasts GTGTCTCACA (8) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GTGTCTCACA (8) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTGTCTCACA (8) 13.6 0.0136 P1 cortex CCCCTGGGGT (6) 9.1 0.0091 P1 cortex GGGGGAGGGG (18) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GTGTCTCACA (8) 3.6 0.0036 Hypothalamus AATCACAATT (2) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GGGGGAGGGG (18) 3.8 0.0038 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTGTCTCACA (8) 9.1 0.0091 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTGTCTCACA (8) 7.2 0.0072 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GTGTCTCACA (8) 7.3 0.0073 E18.5 retina GGGGGAGGGG (18) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CCCCTGGGGT (6) 9.8 0.0098 P0.5 retina GTGTCTCACA (8) 5.9 0.0059 P0.5 retina ATTACGCCAA (233) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GTGTCTCACA (8) 3.5 0.0035 P2.5 retina CCCCTGGGGT (6) 1.8 0.0018 P2.5 retina GGGGGAGGGG (18) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina CCCCTGGGGT (6) 2 0.002 P4.5 retina GTGTCTCACA (8) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGTCTCACA (8) 6.7 0.0067 P6.5 retina GGCAGACAAA (2) 3.3 0.0033 P6.5 retina CCCCTGGGGT (6) 1.7 0.0017 P6.5 retina GGGGGAGGGG (18) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GGGGGAGGGG (18) 1.9 0.0019 P10.5 crx- retina GTGTCTCACA (8) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GTGTCTCACA (8) 5.8 0.0058 P10.5 crx+ retina GGCAGACAAA (2) 1.9 0.0019 P10.5 crx+ retina GGGGGAGGGG (18) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GAGAAGGCAT (2) 5.6 0.0056 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CCCCTGGGGT (6) 3.7 0.0037 Adult retinal GTGTCTCACA (8) 3.7 0.0037 Adult retinal GGGGGAGGGG (18) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GTGTCTCACA (8) 9.6 0.0096 ONL AATCACAATT (2) 1.9 0.0019