Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.203965
D10Ertd516e
DNA segment, Chr 10, ERATO Doi 516, expressed
10
10 63.0 cM
71902
Human Homolog
TIP120A[TBP-interacting protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 118 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
GATTTTATTT (
5
)
16.3
0.0163
P8 Cb GC
TGAATGAATG (
3
)
6.5
0.0065
P8 Cb GC
TTTCTTTCCT
4.9
0.0049
P8 Cb GC
TACAGATTCT
(
3
)
1.6
0.0016
P8 Cb GC
TGACCGCACA
(
3
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
GATTTTATTT (
5
)
13.9
0.0139
Cb medulloblastoma
TACAGATTCT
(
3
)
4.6
0.0046
Cb medulloblastoma
TGAATGAATG (
3
)
4.6
0.0046
Cb medulloblastoma
TGACCGCACA
(
3
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
GATTTTATTT (
5
)
14.8
0.0148
P8 GC+1d culture
TGACCGCACA
(
3
)
5.7
0.0057
P8 GC+1d culture
TGAATGAATG (
3
)
3.4
0.0034
P8 GC+1d culture
CACACAAACA (
4
)
1.1
0.0011
P8 GC+1d culture
TACAGATTCT
(
3
)
1.1
0.0011
P8 GC+1d culture
TGACCGCCCC
1.1
0.0011
P8 GC+1d culture
TTTCTTTCCT
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
GATTTTATTT (
5
)
28.1
0.0281
P8 GC+SHH+1d culture
GATTTCTTGG
(
3
)
4.7
0.0047
P8 GC+SHH+1d culture
TGAATGAATG (
3
)
4.7
0.0047
P8 GC+SHH+1d culture
TGACCGCACA
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
TACAGATTCT
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TGACCGCCCC
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
TGACCGCACA
(
3
)
10.5
0.0105
3T3 fibroblasts
TGACCGCCCC
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
GATTTTATTT (
5
)
9.9
0.0099
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
GATTTTATTT (
5
)
9.1
0.0091
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
GATTTTATTT (
5
)
10.9
0.0109
Hypothalamus
TGACCGCACA
(
3
)
3.6
0.0036
Hypothalamus
CACACAAACA (
4
)
1.8
0.0018
Hypothalamus
GATTTCTTGG
(
3
)
1.8
0.0018
Hypothalamus
TGAATGAATG (
3
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
TGAATGAATG (
3
)
22.5
0.0225
E12.5 retina
GATTTTATTT (
5
)
7.5
0.0075
E12.5 retina
TTTCTTTCCT
3.8
0.0038
E12.5 retina
GATTTCTTGG
(
3
)
1.9
0.0019
E12.5 retina
TCAACAACAA (
5
)
1.9
0.0019
E12.5 retina
TGACCGCACA
(
3
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
GATTTTATTT (
5
)
12.8
0.0128
E14.5 retina
GATTTCTTGG
(
3
)
1.8
0.0018
E14.5 retina
TCAACAACAA (
5
)
1.8
0.0018
E14.5 retina
TTTCTTTCCT
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
TGAATGAATG (
3
)
9.1
0.0091
E16.5 retina
GATTTTATTT (
5
)
3.6
0.0036
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
GATTTTATTT (
5
)
20
0.02
E18.5 retina
TGAATGAATG (
3
)
5.5
0.0055
E18.5 retina
GATTTCTTGG
(
3
)
1.8
0.0018
E18.5 retina
TACAGATTCT
(
3
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
GATTTTATTT (
5
)
5.9
0.0059
P0.5 retina
GATTTCTTGG
(
3
)
3.9
0.0039
P0.5 retina
TGAATGAATG (
3
)
3.9
0.0039
P0.5 retina
TGACCGCACA
(
3
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
GATTTTATTT (
5
)
12.3
0.0123
P2.5 retina
TGAATGAATG (
3
)
8.8
0.0088
P2.5 retina
GATTTCTTGG
(
3
)
3.5
0.0035
P2.5 retina
CACACAAACA (
4
)
1.8
0.0018
P2.5 retina
TTTCTTTCCT
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
GATTTTATTT (
5
)
13.9
0.0139
P4.5 retina
TGAATGAATG (
3
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
TGAATGAATG (
3
)
10
0.01
P6.5 retina
GATTTTATTT (
5
)
5
0.005
P6.5 retina
GATTTCTTGG
(
3
)
3.3
0.0033
P6.5 retina
TCAACAACAA (
5
)
1.7
0.0017
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GATTTTATTT (
5
)
18.6
0.0186
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
GATTTCTTGG
(
3
)
5.6
0.0056
P10.5 crx- retina
TGACCGCACA
(
3
)
5.6
0.0056
P10.5 crx- retina
TGAATGAATG (
3
)
3.7
0.0037
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
TGAATGAATG (
3
)
7.7
0.0077
P10.5 crx+ retina
GATTTTATTT (
5
)
5.8
0.0058
P10.5 crx+ retina
TACAGATTCT
(
3
)
1.9
0.0019
P10.5 crx+ retina
TGACCGCACA
(
3
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
GATTTTATTT (
5
)
3.7
0.0037
Adult retinal
TGAATGAATG (
3
)
3.7
0.0037
Adult retinal
TCAACAACAA (
5
)
1.9
0.0019
Adult retinal
TGACCGCACA
(
3
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
GATTTTATTT (
5
)
9.6
0.0096
ONL
GTTTGGCTTT
(
2
)
3.8
0.0038
ONL
TGAATGAATG (
3
)
3.8
0.0038
ONL
GATTTCTTGG
(
3
)
1.9
0.0019
ONL
TGACCGCACA
(
3
)
1.9
0.0019
