Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.206536	Sdc3	syndecan 3	4	4 60.8 cM	20970
Gene Ontology	cytoskeletal protein binding | integral to membrane | membrane
Human Homolog	SDC3[syndecan 3 (N-syndecan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 63 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCGCTCGTA 17.9 0.0179 P8 Cb GC CTGGGCCAGA (9) 3.3 0.0033 P8 Cb GC AAGAAGAAGG (12) 1.6 0.0016 P8 Cb GC CATTCACCCC 1.6 0.0016 P8 Cb GC CTGGGGGCAG (4) 1.6 0.0016 Cb medulloblastoma GGCGCTCGTA 16.2 0.0162 Cb medulloblastoma AAGAAGAAGG (12) 2.3 0.0023 P8 GC+1d culture GGCGCTCGTA 22.8 0.0228 P8 GC+1d culture CTGCCACAGC (3) 3.4 0.0034 P8 GC+1d culture AAGAAGAAGG (12) 2.3 0.0023 P8 GC+1d culture CATTCACCCC 1.1 0.0011 P8 GC+1d culture CTGGGCCAGA (9) 1.1 0.0011 P8 GC+SHH+1d culture GGCGCTCGTA 19.9 0.0199 P8 GC+SHH+1d culture AAGAAGAAGG (12) 1.2 0.0012 P8 GC+SHH+1d culture CTGCCACAGC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCCAAAACTT (4) 1.2 0.0012 3T3 fibroblasts CTGCCACAGC (3) 7 0.007 3T3 fibroblasts GGCGCTCGTA 7 0.007 E15 cortex GGCGCTCGTA 14.8 0.0148 E15 cortex AGTGTGTGTG (14) 4.9 0.0049 E15 cortex CTGGGCCAGA (9) 4.9 0.0049 P1 cortex GGCGCTCGTA 18.2 0.0182 P1 cortex TGGGTGACAA 4.5 0.0045 Hypothalamus GGCGCTCGTA 16.3 0.0163 Hypothalamus CTGGGCCAGA (9) 5.4 0.0054 Hypothalamus CATTCACCCC 1.8 0.0018 Hypothalamus GCTGTGGGTG (4) 1.8 0.0018 Hypothalamus GTAAGGATGG (2) 1.8 0.0018 E12.5 retina GGCGCTCGTA 5.6 0.0056 E14.5 retina AGTGTGTGTG (14) 1.8 0.0018 E14.5 retina GGCGCTCGTA 1.8 0.0018 E14.5 retina GTAAGGATGG (2) 1.8 0.0018 E14.5 retina TGGGTGACAA 1.8 0.0018 E16.5 retina GGCGCTCGTA 18.1 0.0181 E16.5 retina CTGCCACAGC (3) 5.4 0.0054 E16.5 retina TGGGTGACAA 3.6 0.0036 E16.5 retina AGTGTGTGTG (14) 1.8 0.0018 E16.5 retina GTAAGGATGG (2) 1.8 0.0018 E18.5 retina GGCGCTCGTA 7.3 0.0073 E18.5 retina CTGGGCCAGA (9) 1.8 0.0018 P0.5 retina GGCGCTCGTA 9.8 0.0098 P0.5 retina GCTGTGGGTG (4) 2 0.002 P2.5 retina GGCGCTCGTA 8.8 0.0088 P2.5 retina AAGAAGAAGG (12) 1.8 0.0018 P4.5 retina GGCGCTCGTA 4 0.004 P4.5 retina CATTCACCCC 2 0.002 P4.5 retina GCTGTGGGTG (4) 2 0.002 P6.5 retina GGCGCTCGTA 8.3 0.0083 P6.5 retina CTGGGCCAGA (9) 1.7 0.0017 P10.5 crx- retina GGCGCTCGTA 7.4 0.0074 P10.5 crx- retina CTGGGCCAGA (9) 1.9 0.0019 P10.5 crx- retina GCCAAAACTT (4) 1.9 0.0019 P10.5 crx- retina GTAAGGATGG (2) 1.9 0.0019 P10.5 crx+ retina GGCGCTCGTA 23.1 0.0231 Adult retinal GGCGCTCGTA 13 0.013 Adult retinal CTGCCACAGC (3) 5.6 0.0056 Adult retinal CTGGGGGCAG (4) 1.9 0.0019 Adult retinal GCCAAAACTT (4) 1.9 0.0019 ONL AGTGTGTGTG (14) 5.7 0.0057 ONL AAGAAGAAGG (12) 3.8 0.0038 ONL CTGCCACAGC (3) 1.9 0.0019 ONL CTGGGCCAGA (9) 1.9 0.0019 ONL GGCGCTCGTA 1.9 0.0019