Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.206919
3732409C05Rik
RIKEN cDNA 3732409C05 gene
7
67420
Mm.206919
2900034E22Rik
RIKEN cDNA 2900034E22 gene
7
72904
Mm.206919
1700006P19Rik
RIKEN cDNA 1700006P19 gene
7
69295
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 59 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TAAAAAAAAA (
196
)
47.3
0.0473
P8 Cb GC
ACCGGGTCAT
(
3
)
4.9
0.0049
Cb medulloblastoma
TAAAAAAAAA (
196
)
106.4
0.1064
Cb medulloblastoma
AGAAGCTTAG
(
3
)
2.3
0.0023
Cb medulloblastoma
TAATTTCCAC
(
3
)
2.3
0.0023
P8 GC+1d culture
TAAAAAAAAA (
196
)
66.2
0.0662
P8 GC+1d culture
AGAAGCTTAG
(
3
)
2.3
0.0023
P8 GC+1d culture
ACCGGGTCAT
(
3
)
1.1
0.0011
P8 GC+1d culture
TAATTTCCAC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TAAAAAAAAA (
196
)
93.7
0.0937
P8 GC+SHH+1d culture
ACCGGGTCAT
(
3
)
1.2
0.0012
3T3 fibroblasts
ACCGGGTCAT
(
3
)
7
0.007
3T3 fibroblasts
TAAAAAAAAA (
196
)
7
0.007
3T3 fibroblasts
AGAAGCTTAG
(
3
)
3.5
0.0035
3T3 fibroblasts
GCCAAGGCAA
(
9
)
3.5
0.0035
E15 cortex
TAAAAAAAAA (
196
)
9.9
0.0099
P1 cortex
TAAAAAAAAA (
196
)
50
0.05
P1 cortex
AGAAGCTTAG
(
3
)
4.5
0.0045
P1 cortex
GCTGTGGTCT
(
5
)
4.5
0.0045
Hypothalamus
TAAAAAAAAA (
196
)
32.6
0.0326
Hypothalamus
AGTTAAAATG
(
4
)
3.6
0.0036
Hypothalamus
AGAAGCTTAG
(
3
)
1.8
0.0018
E12.5 retina
TAAAAAAAAA (
196
)
24.4
0.0244
E12.5 retina
TAATTTCCAC
(
3
)
1.9
0.0019
E14.5 retina
TAAAAAAAAA (
196
)
41.9
0.0419
E14.5 retina
AGAAGCTTAG
(
3
)
3.6
0.0036
E14.5 retina
TAATTTCCAC
(
3
)
1.8
0.0018
E16.5 retina
TAAAAAAAAA (
196
)
23.5
0.0235
E16.5 retina
AGAAGCTTAG
(
3
)
1.8
0.0018
E18.5 retina
TAAAAAAAAA (
196
)
107.3
0.1073
E18.5 retina
GCCAAGGCAA
(
9
)
1.8
0.0018
P0.5 retina
TAAAAAAAAA (
196
)
37.3
0.0373
P0.5 retina
AGAAGCTTAG
(
3
)
3.9
0.0039
P0.5 retina
GCTGTGGTCT
(
5
)
2
0.002
P2.5 retina
TAAAAAAAAA (
196
)
72.2
0.0722
P2.5 retina
AGAAGCTTAG
(
3
)
3.5
0.0035
P2.5 retina
GCCAAGGCAA
(
9
)
1.8
0.0018
P4.5 retina
TAAAAAAAAA (
196
)
122.8
0.1228
P4.5 retina
AGAAGCTTAG
(
3
)
4
0.004
P6.5 retina
TAAAAAAAAA (
196
)
63.4
0.0634
P6.5 retina
ACCGGGTCAT
(
3
)
5
0.005
P6.5 retina
AGAAGCTTAG
(
3
)
5
0.005
P6.5 retina
ATGGTGTGTG
(
4
)
1.7
0.0017
P10.5 crx- retina
TAAAAAAAAA (
196
)
9.3
0.0093
P10.5 crx- retina
AGAAGCTTAG
(
3
)
3.7
0.0037
P10.5 crx- retina
ACCGGGTCAT
(
3
)
1.9
0.0019
P10.5 crx+ retina
TAAAAAAAAA (
196
)
25
0.025
P10.5 crx+ retina
ATGGTGTGTG
(
4
)
1.9
0.0019
P10.5 crx+ retina
GCTGTGGTCT
(
5
)
1.9
0.0019
Adult retinal
TAAAAAAAAA (
196
)
18.5
0.0185
Adult retinal
AGAAGCTTAG
(
3
)
1.9
0.0019
Adult retinal
AGTTAAAATG
(
4
)
1.9
0.0019
Adult retinal
ATGGTGTGTG
(
4
)
1.9
0.0019
Adult retinal
GCCAAGGCAA
(
9
)
1.9
0.0019
Adult retinal
GCTGTGGTCT
(
5
)
1.9
0.0019
ONL
TAAAAAAAAA (
196
)
28.7
0.0287
ONL
AGAAGCTTAG
(
3
)
3.8
0.0038
ONL
GCCAAGGCAA
(
9
)
3.8
0.0038
ONL
AGTTAAAATG
(
4
)
1.9
0.0019
