Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.20837	Cln2	ceroid-lipofuscinosis, neuronal 2	7	7 50.0 cM	12751
Gene Ontology	extracellular space | hydrolase activity | lysosome | mitochondrion | peptidase activity | serine-type endopeptidase activity
Human Homolog	CLN2[ceroid-lipofuscinosis, neuronal 2, late infantile (Jansky-Bielschowsky disease)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 80 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC GGACAGGACT (6) 1.6 0.0016 P8 Cb GC TCCTGACCCT (4) 1.6 0.0016 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma TAGCTGGGAA 4.6 0.0046 Cb medulloblastoma TTATTTAAAG (9) 2.3 0.0023 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture GGACAGGACT (6) 2.3 0.0023 P8 GC+1d culture ACGAGAAAGC (2) 1.1 0.0011 P8 GC+1d culture GTTTCTGTTT (3) 1.1 0.0011 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture ACGAGAAAGC (2) 2.3 0.0023 P8 GC+SHH+1d culture TAGCTGGGAA 1.2 0.0012 P8 GC+SHH+1d culture TTATTTAAAG (9) 1.2 0.0012 P8 GC+SHH+1d culture TTGTAGAAGG (4) 1.2 0.0012 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 3T3 fibroblasts ACGAGCAGCA (5) 3.5 0.0035 3T3 fibroblasts TGGATTTTGT (3) 3.5 0.0035 E15 cortex ACGAGAAAGC (2) 4.9 0.0049 E15 cortex TTGTAGAAGG (4) 4.9 0.0049 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex TCCTGACCCT (4) 4.5 0.0045 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus TAGCTGGGAA 1.8 0.0018 Hypothalamus TCCTGACCCT (4) 1.8 0.0018 Hypothalamus TGGATTTTGT (3) 1.8 0.0018 Hypothalamus TTATTTAAAG (9) 1.8 0.0018 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina ACGAGCAGCA (5) 1.9 0.0019 E12.5 retina GTCCCCATTC (2) 1.9 0.0019 E12.5 retina TCCTGACCCT (4) 1.9 0.0019 E12.5 retina TTGTAGAAGG (4) 1.9 0.0019 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina GTTTCTGTTT (3) 3.6 0.0036 E14.5 retina TTATTTAAAG (9) 3.6 0.0036 E14.5 retina ACGAGCAGCA (5) 1.8 0.0018 E14.5 retina TGGATTTTGT (3) 1.8 0.0018 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina ACGAGAAAGC (2) 1.8 0.0018 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina TTATTTAAAG (9) 1.8 0.0018 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina TCCTGACCCT (4) 2 0.002 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina ACGAGAAAGC (2) 1.8 0.0018 P2.5 retina ACGAGCAGCA (5) 1.8 0.0018 P2.5 retina AGCTGTGTGG (3) 1.8 0.0018 P2.5 retina GGACAGGACT (6) 1.8 0.0018 P2.5 retina TAGCTGGGAA 1.8 0.0018 P2.5 retina TCCTGACCCT (4) 1.8 0.0018 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina TGGATTTTGT (3) 5.9 0.0059 P4.5 retina TTATTTAAAG (9) 4 0.004 P4.5 retina TAGCTGGGAA 2 0.002 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina GGACAGGACT (6) 5 0.005 P6.5 retina ACGAGAAAGC (2) 3.3 0.0033 P6.5 retina ACGAGCAGCA (5) 3.3 0.0033 P6.5 retina TAGCTGGGAA 3.3 0.0033 P6.5 retina TCCTGACCCT (4) 1.7 0.0017 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina GGACAGGACT (6) 3.7 0.0037 P10.5 crx- retina TAGCTGGGAA 3.7 0.0037 P10.5 crx- retina ACGAGAAAGC (2) 1.9 0.0019 P10.5 crx- retina AGCTGTGTGG (3) 1.9 0.0019 P10.5 crx- retina GTCCCCATTC (2) 1.9 0.0019 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina GTTTCTGTTT (3) 3.8 0.0038 P10.5 crx+ retina ACGAGAAAGC (2) 1.9 0.0019 P10.5 crx+ retina TAGCTGGGAA 1.9 0.0019 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal GGACAGGACT (6) 13 0.013 Adult retinal ACGAGAAAGC (2) 3.7 0.0037 Adult retinal TAGCTGGGAA 3.7 0.0037 Adult retinal TTATTTAAAG (9) 1.9 0.0019 ONL TGTGTGTGTG (115) 23 0.023 ONL GGACAGGACT (6) 3.8 0.0038 ONL ACGAGAAAGC (2) 1.9 0.0019 ONL AGCTGTGTGG (3) 1.9 0.0019 ONL TAGCTGGGAA 1.9 0.0019