Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.209207	Sec23a	SEC23A (S. cerevisiae)	12	2 80.0 cM	20334
Gene Ontology	COPII vesicle coat | endoplasmic reticulum | ER to Golgi transport | Golgi apparatus | Golgi membrane | intracellular protein transport | protein binding | protein transport | transport
Human Homolog	SEC23A[Sec23 homolog A (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 130 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC AACACAATCA (6) 1.6 0.0016 P8 Cb GC AGGTCACCCT (6) 1.6 0.0016 P8 Cb GC TAAAAAAAAG (4) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AACACAATCA (6) 6.9 0.0069 Cb medulloblastoma CATCACCACA (7) 4.6 0.0046 Cb medulloblastoma GGGGGTGGGG (13) 2.3 0.0023 Cb medulloblastoma TAAAAAAAAG (4) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture AACACAATCA (6) 5.7 0.0057 P8 GC+1d culture CATCACCACA (7) 5.7 0.0057 P8 GC+1d culture CCAGATGTGT (3) 5.7 0.0057 P8 GC+1d culture GAAAAATGTT (5) 2.3 0.0023 P8 GC+1d culture GGGGGTGGGG (13) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture CATCACCACA (7) 2.3 0.0023 P8 GC+SHH+1d culture ACATAATTAA (3) 1.2 0.0012 P8 GC+SHH+1d culture AGGTCACCCT (6) 1.2 0.0012 P8 GC+SHH+1d culture CCAGATGTGT (3) 1.2 0.0012 P8 GC+SHH+1d culture GAAAAATGTT (5) 1.2 0.0012 P8 GC+SHH+1d culture GGGGGTGGGG (13) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CCAGATGTGT (3) 21 0.021 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex AACACAATCA (6) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex GAAAAATGTT (5) 9.1 0.0091 P1 cortex ACATAATTAA (3) 4.5 0.0045 P1 cortex TAAAAAAAAG (4) 4.5 0.0045 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus ACATAATTAA (3) 1.8 0.0018 Hypothalamus CATCACCACA (7) 1.8 0.0018 Hypothalamus GGGGGTGGGG (13) 1.8 0.0018 Hypothalamus GTGGCAGCCA (4) 1.8 0.0018 Hypothalamus TGAGAAGGTT (5) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina AACACAATCA (6) 5.6 0.0056 E12.5 retina CATCACCACA (7) 1.9 0.0019 E12.5 retina CCAGATGTGT (3) 1.9 0.0019 E12.5 retina GGGGGTGGGG (13) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina AACACAATCA (6) 3.6 0.0036 E14.5 retina CATCACCACA (7) 1.8 0.0018 E14.5 retina GGGGGTGGGG (13) 1.8 0.0018 E14.5 retina GTGGTGGGAG (4) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina AACACAATCA (6) 3.6 0.0036 E16.5 retina ACATAATTAA (3) 1.8 0.0018 E16.5 retina CATCACCACA (7) 1.8 0.0018 E16.5 retina GTGGCAGCCA (4) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina ACATAATTAA (3) 3.6 0.0036 E18.5 retina GAAAAATGTT (5) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina CCAGATGTGT (3) 5.9 0.0059 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina TAAAAAAAAG (4) 5.3 0.0053 P2.5 retina AACACAATCA (6) 1.8 0.0018 P2.5 retina AGGTCACCCT (6) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina ACATAATTAA (3) 5.9 0.0059 P4.5 retina AACACAATCA (6) 2 0.002 P4.5 retina AGGTCACCCT (6) 2 0.002 P4.5 retina CATCACCACA (7) 2 0.002 P4.5 retina GGGGGTGGGG (13) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina AGGTCACCCT (6) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina AACACAATCA (6) 7.4 0.0074 P10.5 crx- retina CATCACCACA (7) 5.6 0.0056 P10.5 crx- retina AGGTCACCCT (6) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina AACACAATCA (6) 5.8 0.0058 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina GAAAAATGTT (5) 3.8 0.0038 P10.5 crx+ retina GGGGGTGGGG (13) 3.8 0.0038 P10.5 crx+ retina CATCACCACA (7) 1.9 0.0019 P10.5 crx+ retina GTGGCAGCCA (4) 1.9 0.0019 P10.5 crx+ retina GTGGTGGGAG (4) 1.9 0.0019 P10.5 crx+ retina TGAGAAGGTT (5) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal AACACAATCA (6) 3.7 0.0037 Adult retinal CATCACCACA (7) 1.9 0.0019 Adult retinal GTGGTGGGAG (4) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL AACACAATCA (6) 3.8 0.0038 ONL AGGTCACCCT (6) 1.9 0.0019 ONL CATCACCACA (7) 1.9 0.0019 ONL CCAGATGTGT (3) 1.9 0.0019 ONL GTGGCAGCCA (4) 1.9 0.0019 ONL TGAGAAGGTT (5) 1.9 0.0019