Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.209750
1110054H05Rik
RIKEN cDNA 1110054H05 gene
11
68837
Mm.209750
6230415M23Rik
RIKEN cDNA 6230415M23 gene
11
109037
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 146 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
GGAAAAAAAA (
69
)
8.2
0.0082
P8 Cb GC
ATGCGAGTGA
(
2
)
4.9
0.0049
P8 Cb GC
CTTGCCCAGG
(
6
)
3.3
0.0033
P8 Cb GC
CAGCCTCAGC (
3
)
1.6
0.0016
P8 Cb GC
TCAACACGCA
(
3
)
1.6
0.0016
P8 Cb GC
TGTGTGCCCA (
7
)
1.6
0.0016
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
GGAAAAAAAA (
69
)
41.6
0.0416
Cb medulloblastoma
ATGCGAGTGA
(
2
)
4.6
0.0046
Cb medulloblastoma
TGTGTGCCCA (
7
)
4.6
0.0046
Cb medulloblastoma
AGGCCAGGGG
(
3
)
2.3
0.0023
Cb medulloblastoma
CAGCCTCAGC (
3
)
2.3
0.0023
Cb medulloblastoma
CTTGCCCAGG
(
6
)
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
CAGCCTCAGC (
3
)
9.1
0.0091
P8 GC+1d culture
ATGCGAGTGA
(
2
)
8
0.008
P8 GC+1d culture
GGAAAAAAAA (
69
)
5.7
0.0057
P8 GC+1d culture
TGTGTGCCCA (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
CAGCCTCAGC (
3
)
9.4
0.0094
P8 GC+SHH+1d culture
GGAAAAAAAA (
69
)
7
0.007
P8 GC+SHH+1d culture
TGTGTGCCCA (
7
)
3.5
0.0035
P8 GC+SHH+1d culture
ATGCGAGTGA
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
AACCCAGGTG
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
AGGCCAGGGG
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GCTTTGTGCG (
3
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
CAGCCTCAGC (
3
)
7
0.007
3T3 fibroblasts
ATGCGAGTGA
(
2
)
3.5
0.0035
3T3 fibroblasts
CCTACAGCAG (
4
)
3.5
0.0035
3T3 fibroblasts
TCAACACGCA
(
3
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
CAGCCTCAGC (
3
)
9.9
0.0099
E15 cortex
GGAAAAAAAA (
69
)
9.9
0.0099
E15 cortex
TGTGTGCCCA (
7
)
9.9
0.0099
E15 cortex
ATGCGAGTGA
(
2
)
4.9
0.0049
E15 cortex
CCTACAGCAG (
4
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
CTTGCCCAGG
(
6
)
4.5
0.0045
P1 cortex
GGAAAAAAAA (
69
)
4.5
0.0045
P1 cortex
TCAACACGCA
(
3
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
GGAAAAAAAA (
69
)
14.5
0.0145
Hypothalamus
CAGCCTCAGC (
3
)
9.1
0.0091
Hypothalamus
AGGCCAGTGG (
4
)
7.2
0.0072
Hypothalamus
TGTGTGCCCA (
7
)
3.6
0.0036
Hypothalamus
AACCCAGGTG
(
4
)
1.8
0.0018
Hypothalamus
ATGCGAGTGA
(
2
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
ATGCGAGTGA
(
2
)
9.4
0.0094
E12.5 retina
CAGCCTCAGC (
3
)
1.9
0.0019
E12.5 retina
CTTGCCCAGG
(
6
)
1.9
0.0019
E12.5 retina
GGAAAAAAAA (
69
)
1.9
0.0019
E12.5 retina
TCAACACGCA
(
3
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
GGAAAAAAAA (
69
)
10.9
0.0109
E14.5 retina
ATGCGAGTGA
(
2
)
5.5
0.0055
E14.5 retina
TGTGTGCCCA (
7
)
3.6
0.0036
E14.5 retina
AACCCAGGTG
(
4
)
1.8
0.0018
E14.5 retina
CAGCCTCAGC (
3
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
ATGCGAGTGA
(
2
)
7.2
0.0072
E16.5 retina
CAGCCTCAGC (
3
)
3.6
0.0036
E16.5 retina
AACCCAGGTG
(
4
)
1.8
0.0018
E16.5 retina
CCTACAGCAG (
4
)
1.8
0.0018
E16.5 retina
GCTTTGTGCG (
3
)
1.8
0.0018
E16.5 retina
GGAAAAAAAA (
69
)
1.8
0.0018
E16.5 retina
TGTGTGCCCA (
7
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
GGAAAAAAAA (
69
)
16.4
0.0164
E18.5 retina
ATGCGAGTGA
(
2
)
14.6
0.0146
E18.5 retina
CAGCCTCAGC (
3
)
3.6
0.0036
E18.5 retina
AGGCCAGGGG
(
3
)
1.8
0.0018
E18.5 retina
GCTTTGTGCG (
3
)
1.8
0.0018
E18.5 retina
TCAACACGCA
(
3
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
GGAAAAAAAA (
69
)
13.7
0.0137
P0.5 retina
TGTGTGCCCA (
7
)
5.9
0.0059
P0.5 retina
ATGCGAGTGA
(
2
)
3.9
0.0039
P0.5 retina
CTTGCCCAGG
(
6
)
2
0.002
P0.5 retina
GCTTTGTGCG (
3
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
GGAAAAAAAA (
69
)
7
0.007
P2.5 retina
GCTTTGTGCG (
3
)
3.5
0.0035
P2.5 retina
CAGCCTCAGC (
3
)
1.8
0.0018
P2.5 retina
CTCAGGTTCC (
3
)
1.8
0.0018
P2.5 retina
TGTGTGCCCA (
7
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
GGAAAAAAAA (
69
)
13.9
0.0139
P4.5 retina
ATGCGAGTGA
(
2
)
7.9
0.0079
P4.5 retina
CAGCCTCAGC (
3
)
5.9
0.0059
P4.5 retina
CTTGCCCAGG
(
6
)
4
0.004
P4.5 retina
CTCAGGTTCC (
3
)
2
0.002
P4.5 retina
TGTGTGCCCA (
7
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
GGAAAAAAAA (
69
)
13.3
0.0133
P6.5 retina
CAGCCTCAGC (
3
)
6.7
0.0067
P6.5 retina
ATGCGAGTGA
(
2
)
3.3
0.0033
P6.5 retina
AACCCAGGTG
(
4
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
CAGCCTCAGC (
3
)
16.7
0.0167
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
GGAAAAAAAA (
69
)
3.7
0.0037
P10.5 crx- retina
ATGCGAGTGA
(
2
)
1.9
0.0019
P10.5 crx- retina
TGTGTGCCCA (
7
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
GGAAAAAAAA (
69
)
15.4
0.0154
P10.5 crx+ retina
CAGCCTCAGC (
3
)
11.5
0.0115
P10.5 crx+ retina
ATGCGAGTGA
(
2
)
3.8
0.0038
P10.5 crx+ retina
TGTGTGCCCA (
7
)
3.8
0.0038
P10.5 crx+ retina
AGGCCAGGGG
(
3
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
CAGCCTCAGC (
3
)
16.7
0.0167
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
GGAAAAAAAA (
69
)
5.6
0.0056
Adult retinal
TGTGTGCCCA (
7
)
3.7
0.0037
Adult retinal
AGGCCAGGGG
(
3
)
1.9
0.0019
Adult retinal
AGGCCAGTGG (
4
)
1.9
0.0019
Adult retinal
ATGCGAGTGA
(
2
)
1.9
0.0019
Adult retinal
CTCAGGTTCC (
3
)
1.9
0.0019
Adult retinal
GCTTTGTGCG (
3
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
GGAAAAAAAA (
69
)
17.2
0.0172
ONL
ATGCGAGTGA
(
2
)
5.7
0.0057
ONL
CAGCCTCAGC (
3
)
5.7
0.0057
ONL
GCTTTGTGCG (
3
)
3.8
0.0038
ONL
CTTGCCCAGG
(
6
)
1.9
0.0019
ONL
TGTGTGCCCA (
7
)
1.9
0.0019
