Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2108	Ttr	transthyretin	18	18 A2 (18 7.0 cM)	22139
Gene Ontology	carrier activity | extracellular space | hormone activity | retinol binding | steroid binding | thyroid hormone generation | transport
Human Homolog	TTR[transthyretin (prealbumin, amyloidosis type I)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 4 In Situ Hybridization Images

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SAGE Tags

Total 186 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATTCGCGGA 166.4 0.1664 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC CTCCTGCAGC (3) 27.7 0.0277 P8 Cb GC CCTTTCCCTT (7) 19.6 0.0196 P8 Cb GC GAACGGGGAA (2) 13.1 0.0131 P8 Cb GC TTCAAAAGCC 8.2 0.0082 P8 Cb GC AAGACTCAGA (4) 6.5 0.0065 P8 Cb GC TACCCTTGCC (3) 4.9 0.0049 P8 Cb GC TGCAAAAAAA (21) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC TACATATCCT (2) 3.3 0.0033 P8 Cb GC AGAATACATA (3) 1.6 0.0016 P8 Cb GC CAGTTGCTTA (4) 1.6 0.0016 P8 Cb GC GCAGCCCTGT (4) 1.6 0.0016 P8 Cb GC GCCCCCACAC (4) 1.6 0.0016 P8 Cb GC GCTGATCCGG (2) 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma AATTCGCGGA 80.9 0.0809 Cb medulloblastoma CTCCTGCAGC (3) 25.4 0.0254 Cb medulloblastoma GAACGGGGAA (2) 13.9 0.0139 Cb medulloblastoma TGCAAAAAAA (21) 13.9 0.0139 Cb medulloblastoma TTCAAAAGCC 13.9 0.0139 Cb medulloblastoma CAGTTGCTTA (4) 2.3 0.0023 Cb medulloblastoma CCTTTCCCTT (7) 2.3 0.0023 Cb medulloblastoma TACCCTTGCC (3) 2.3 0.0023 Cb medulloblastoma TTGTACAAAA (4) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture AATTCGCGGA 422.4 0.4224 P8 GC+1d culture CTCCTGCAGC (3) 43.4 0.0434 P8 GC+1d culture GAACGGGGAA (2) 41.1 0.0411 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture CCTTTCCCTT (7) 14.8 0.0148 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TACCCTTGCC (3) 12.6 0.0126 P8 GC+1d culture TTCAAAAGCC 10.3 0.0103 P8 GC+1d culture TGCAAAAAAA (21) 9.1 0.0091 P8 GC+1d culture CAGTTGCTTA (4) 1.1 0.0011 P8 GC+1d culture GGAAGCCCTT (8) 1.1 0.0011 P8 GC+1d culture TACATATCCT (2) 1.1 0.0011 P8 GC+SHH+1d culture AATTCGCGGA 204.9 0.2049 P8 GC+SHH+1d culture GAACGGGGAA (2) 69.1 0.0691 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CTCCTGCAGC (3) 31.6 0.0316 P8 GC+SHH+1d culture CCTTTCCCTT (7) 16.4 0.0164 P8 GC+SHH+1d culture TGCAAAAAAA (21) 15.2 0.0152 P8 GC+SHH+1d culture TACCCTTGCC (3) 10.5 0.0105 P8 GC+SHH+1d culture TTCAAAAGCC 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture CAGTTGCTTA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCAGCCCTGT (4) 1.2 0.0012 P8 GC+SHH+1d culture GCTGATCCGG (2) 1.2 0.0012 P8 GC+SHH+1d culture GGAAGCCCTT (8) 1.2 0.0012 P8 GC+SHH+1d culture GGTCAAAAAA (7) 1.2 0.0012 3T3 fibroblasts CTCCTGCAGC (3) 56.1 0.0561 3T3 fibroblasts TACCCTTGCC (3) 31.5 0.0315 3T3 fibroblasts AAGACTCAGA (4) 24.5 0.0245 3T3 fibroblasts CAGTTGCTTA (4) 3.5 0.0035 3T3 fibroblasts CCTTTCCCTT (7) 3.5 0.0035 3T3 fibroblasts GCTGTCGTCA (5) 3.5 0.0035 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex GCTGTCGTCA (5) 29.7 0.0297 E15 cortex CTCCTGCAGC (3) 24.7 0.0247 E15 cortex AAGACTCAGA (4) 19.8 0.0198 E15 cortex CCTTTCCCTT (7) 9.9 0.0099 E15 cortex GGAAGCCCTT (8) 4.9 0.0049 E15 cortex GGTCAAAAAA (7) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex AATTCGCGGA 22.7 0.0227 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex CCTTTCCCTT (7) 13.6 0.0136 P1 cortex CTCCTGCAGC (3) 13.6 0.0136 P1 cortex TACCCTTGCC (3) 13.6 0.0136 P1 cortex TTCAAAAGCC 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus AATTCGCGGA 63.4 0.0634 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus GAACGGGGAA (2) 39.8 0.0398 Hypothalamus CTCCTGCAGC (3) 21.7 0.0217 Hypothalamus TGCAAAAAAA (21) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TTCAAAAGCC 5.4 0.0054 Hypothalamus CCTTTCCCTT (7) 3.6 0.0036 Hypothalamus TTGTACAAAA (4) 3.6 0.0036 Hypothalamus GCTGTCGTCA (5) 1.8 0.0018 Hypothalamus TACCCTTGCC (3) 1.8 0.0018 E12.5 retina CTCCTGCAGC (3) 26.3 0.0263 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina TACCCTTGCC (3) 18.8 0.0188 E12.5 retina CCTTTCCCTT (7) 16.9 0.0169 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina CAGTTGCTTA (4) 5.6 0.0056 E12.5 retina TCTAATTTTC (3) 1.9 0.0019 E12.5 retina TGCAAAAAAA (21) 1.9 0.0019 E14.5 retina CTCCTGCAGC (3) 23.7 0.0237 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TACCCTTGCC (3) 12.8 0.0128 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina CCTTTCCCTT (7) 3.6 0.0036 E14.5 retina GCTGATCCGG (2) 3.6 0.0036 E14.5 retina CAGTTGCTTA (4) 1.8 0.0018 E14.5 retina GAAACCAGGC (5) 1.8 0.0018 E14.5 retina GGTCAAAAAA (7) 1.8 0.0018 E14.5 retina TCTAATTTTC (3) 1.8 0.0018 E14.5 retina TGCAAAAAAA (21) 1.8 0.0018 E16.5 retina CTCCTGCAGC (3) 34.4 0.0344 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina TACCCTTGCC (3) 9.1 0.0091 E16.5 retina CCTTTCCCTT (7) 7.2 0.0072 E16.5 retina TGCAAAAAAA (21) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GGAAGCCCTT (8) 3.6 0.0036 E16.5 retina GAAACCAGGC (5) 1.8 0.0018 E16.5 retina GCTGATCCGG (2) 1.8 0.0018 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CTCCTGCAGC (3) 38.2 0.0382 E18.5 retina TGCAAAAAAA (21) 20 0.02 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina TACCCTTGCC (3) 7.3 0.0073 E18.5 retina CCTTTCCCTT (7) 3.6 0.0036 E18.5 retina CAGTTGCTTA (4) 1.8 0.0018 E18.5 retina GGTCAAAAAA (7) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina CCTTTCCCTT (7) 11.8 0.0118 P0.5 retina TACCCTTGCC (3) 9.8 0.0098 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TGCAAAAAAA (21) 7.9 0.0079 P0.5 retina CTCCTGCAGC (3) 5.9 0.0059 P0.5 retina TCTAATTTTC (3) 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CTCCTGCAGC (3) 26.4 0.0264 P2.5 retina CCTTTCCCTT (7) 15.8 0.0158 P2.5 retina TACCCTTGCC (3) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina CAGTTGCTTA (4) 3.5 0.0035 P2.5 retina TGCAAAAAAA (21) 3.5 0.0035 P2.5 retina AATTCGCGGA 1.8 0.0018 P2.5 retina TTCAAAAGCC 1.8 0.0018 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina CTCCTGCAGC (3) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CCTTTCCCTT (7) 5.9 0.0059 P4.5 retina TACCCTTGCC (3) 5.9 0.0059 P4.5 retina TGCAAAAAAA (21) 4 0.004 P4.5 retina GAAACCAGGC (5) 2 0.002 P4.5 retina GCTGATCCGG (2) 2 0.002 P4.5 retina GGTCAAAAAA (7) 2 0.002 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina CTCCTGCAGC (3) 31.7 0.0317 P6.5 retina CCTTTCCCTT (7) 10 0.01 P6.5 retina TACCCTTGCC (3) 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina TGCAAAAAAA (21) 5 0.005 P6.5 retina AATTCGCGGA 3.3 0.0033 P6.5 retina CACCCCCCAC (4) 1.7 0.0017 P6.5 retina CAGTTGCTTA (4) 1.7 0.0017 P6.5 retina GGAAGCCCTT (8) 1.7 0.0017 P10.5 crx- retina AATTCGCGGA 33.4 0.0334 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina TACCCTTGCC (3) 13 0.013 P10.5 crx- retina GCTGATCCGG (2) 9.3 0.0093 P10.5 crx- retina CCTTTCCCTT (7) 7.4 0.0074 P10.5 crx- retina CTCCTGCAGC (3) 7.4 0.0074 P10.5 crx- retina AAGACTCAGA (4) 1.9 0.0019 P10.5 crx- retina CAGTTGCTTA (4) 1.9 0.0019 P10.5 crx- retina GAACGGGGAA (2) 1.9 0.0019 P10.5 crx- retina GCAGCCCTGT (4) 1.9 0.0019 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina CTCCTGCAGC (3) 23.1 0.0231 P10.5 crx+ retina TACCCTTGCC (3) 9.6 0.0096 P10.5 crx+ retina TGCAAAAAAA (21) 9.6 0.0096 P10.5 crx+ retina CCTTTCCCTT (7) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AATTCGCGGA 1.9 0.0019 P10.5 crx+ retina GAAACCAGGC (5) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal CTCCTGCAGC (3) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CCTTTCCCTT (7) 5.6 0.0056 Adult retinal TGCAAAAAAA (21) 5.6 0.0056 Adult retinal AATTCGCGGA 3.7 0.0037 Adult retinal CACCCCCCAC (4) 3.7 0.0037 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL TGCAAAAAAA (21) 7.7 0.0077 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AATTCGCGGA 1.9 0.0019 ONL AGAATACATA (3) 1.9 0.0019