Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.211229	6720464I07Rik	RIKEN cDNA 6720464I07 gene	15		77730
Mm.211229	Trio	triple functional domain (PTPRF interacting)	15		223435
Gene Ontology	biological_process unknown | cellular_component unknown | molecular_function unknown
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTACACAGT (3) 11.4 0.0114 P8 Cb GC GTGCGGCTGG (3) 4.9 0.0049 P8 Cb GC TAAAATGTCC (2) 3.3 0.0033 P8 Cb GC CAGACAAAGC (7) 1.6 0.0016 P8 Cb GC CGATTGAGAA (4) 1.6 0.0016 P8 Cb GC GATAGAATTT (4) 1.6 0.0016 P8 Cb GC GGCAGAGACC (2) 1.6 0.0016 Cb medulloblastoma CAGACAAAGC (7) 6.9 0.0069 Cb medulloblastoma GATAGAATTT (4) 4.6 0.0046 Cb medulloblastoma TTTACACAGT (3) 4.6 0.0046 Cb medulloblastoma CAAAAAAATA (5) 2.3 0.0023 Cb medulloblastoma GGCAGAGACC (2) 2.3 0.0023 Cb medulloblastoma GTGCGGCTGG (3) 2.3 0.0023 Cb medulloblastoma TAAAATGTCC (2) 2.3 0.0023 P8 GC+1d culture TTTACACAGT (3) 4.6 0.0046 P8 GC+1d culture CAAAAAAATA (5) 2.3 0.0023 P8 GC+1d culture CGTGAGTGCA (3) 2.3 0.0023 P8 GC+1d culture TAATAAATAT (5) 2.3 0.0023 P8 GC+1d culture CAAAAAATAA (5) 1.1 0.0011 P8 GC+1d culture CAGACAAAGC (7) 1.1 0.0011 P8 GC+1d culture GCTGGAGGAG (9) 1.1 0.0011 P8 GC+1d culture GGCTCAGCCA (5) 1.1 0.0011 P8 GC+SHH+1d culture GTGCGGCTGG (3) 3.5 0.0035 P8 GC+SHH+1d culture TTTACACAGT (3) 3.5 0.0035 P8 GC+SHH+1d culture TTTCTGGTGT (5) 2.3 0.0023 P8 GC+SHH+1d culture CAAAAAAATA (5) 1.2 0.0012 P8 GC+SHH+1d culture CGTGAGTGCA (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGGAAGGGT (2) 1.2 0.0012 P8 GC+SHH+1d culture TAATAAATAT (5) 1.2 0.0012 3T3 fibroblasts GTGCGGCTGG (3) 14 0.014 3T3 fibroblasts CAGACAAAGC (7) 3.5 0.0035 3T3 fibroblasts CGTGAGTGCA (3) 3.5 0.0035 3T3 fibroblasts TAAAATGTCC (2) 3.5 0.0035 E15 cortex CCTATGTTCA (2) 4.9 0.0049 E15 cortex CGTGAGTGCA (3) 4.9 0.0049 P1 cortex TTTACACAGT (3) 9.1 0.0091 P1 cortex CAGACAAAGC (7) 4.5 0.0045 P1 cortex GTGCGGCTGG (3) 4.5 0.0045 P1 cortex TTTCTGGTGT (5) 4.5 0.0045 Hypothalamus CAGACAAAGC (7) 9.1 0.0091 Hypothalamus TCTACTCCTA (3) 5.4 0.0054 Hypothalamus CGTGAGTGCA (3) 3.6 0.0036 Hypothalamus CAAAAAAATA (5) 1.8 0.0018 Hypothalamus CAAAAAATAA (5) 1.8 0.0018 Hypothalamus GCTGGAGGAG (9) 1.8 0.0018 Hypothalamus GTGCGGCTGG (3) 1.8 0.0018 Hypothalamus TTTCTGGTGT (5) 1.8 0.0018 E12.5 retina CAGACAAAGC (7) 11.3 0.0113 E12.5 retina GGCAGAGACC (2) 1.9 0.0019 E12.5 retina GGCTCAGCCA (5) 1.9 0.0019 E12.5 retina GTGCGGCTGG (3) 1.9 0.0019 E12.5 retina TTTACACAGT (3) 1.9 0.0019 E12.5 retina TTTCTGGTGT (5) 1.9 0.0019 E14.5 retina CAGACAAAGC (7) 5.5 0.0055 E14.5 retina CGTGAGTGCA (3) 5.5 0.0055 E14.5 retina TAATAAATAT (5) 3.6 0.0036 E14.5 retina TTTACACAGT (3) 3.6 0.0036 E14.5 retina CAAAAAATAA (5) 1.8 0.0018 E14.5 retina GTGCGGCTGG (3) 1.8 0.0018 E14.5 retina TAAAATGTCC (2) 1.8 0.0018 E16.5 retina CAGACAAAGC (7) 10.9 0.0109 E16.5 retina TAAAATGTCC (2) 5.4 0.0054 E16.5 retina TTTCTGGTGT (5) 5.4 0.0054 E16.5 retina CGTGAGTGCA (3) 3.6 0.0036 E16.5 retina CAAAAAATAA (5) 1.8 0.0018 E16.5 retina CCTATGTTCA (2) 1.8 0.0018 E16.5 retina TAATAAATAT (5) 1.8 0.0018 E16.5 retina TTTACACAGT (3) 1.8 0.0018 E18.5 retina CAGACAAAGC (7) 7.3 0.0073 E18.5 retina TAAAATGTCC (2) 5.5 0.0055 E18.5 retina GTGCGGCTGG (3) 3.6 0.0036 E18.5 retina CGATTGAGAA (4) 1.8 0.0018 P0.5 retina TTTACACAGT (3) 3.9 0.0039 P0.5 retina CAAAAAATAA (5) 2 0.002 P0.5 retina CAGACAAAGC (7) 2 0.002 P0.5 retina CGTGAGTGCA (3) 2 0.002 P0.5 retina GATAGAATTT (4) 2 0.002 P0.5 retina TAAAATGTCC (2) 2 0.002 P2.5 retina CAGACAAAGC (7) 12.3 0.0123 P2.5 retina CAAAAAATAA (5) 3.5 0.0035 P2.5 retina CGATTGAGAA (4) 1.8 0.0018 P2.5 retina CGTGAGTGCA (3) 1.8 0.0018 P2.5 retina CTGGAAGGGT (2) 1.8 0.0018 P2.5 retina GATAGAATTT (4) 1.8 0.0018 P2.5 retina GGCTCAGCCA (5) 1.8 0.0018 P2.5 retina TAAAATGTCC (2) 1.8 0.0018 P2.5 retina TTTACACAGT (3) 1.8 0.0018 P4.5 retina CAGACAAAGC (7) 11.9 0.0119 P4.5 retina CAAAAAATAA (5) 2 0.002 P4.5 retina GTGCGGCTGG (3) 2 0.002 P4.5 retina TTTACACAGT (3) 2 0.002 P6.5 retina CAGACAAAGC (7) 11.7 0.0117 P6.5 retina TAAAATGTCC (2) 3.3 0.0033 P6.5 retina GGCAGAGACC (2) 1.7 0.0017 P6.5 retina GTGCGGCTGG (3) 1.7 0.0017 P6.5 retina TTTACACAGT (3) 1.7 0.0017 P6.5 retina TTTCTGGTGT (5) 1.7 0.0017 P10.5 crx- retina CAGACAAAGC (7) 7.4 0.0074 P10.5 crx- retina GCTGGAGGAG (9) 3.7 0.0037 P10.5 crx- retina TTTACACAGT (3) 3.7 0.0037 P10.5 crx- retina TTTCTGGTGT (5) 3.7 0.0037 P10.5 crx- retina CAAAAAAATA (5) 1.9 0.0019 P10.5 crx- retina CGTGAGTGCA (3) 1.9 0.0019 P10.5 crx+ retina CAGACAAAGC (7) 7.7 0.0077 P10.5 crx+ retina TTTACACAGT (3) 3.8 0.0038 P10.5 crx+ retina CGTGAGTGCA (3) 1.9 0.0019 P10.5 crx+ retina GATAGAATTT (4) 1.9 0.0019 P10.5 crx+ retina GGCTCAGCCA (5) 1.9 0.0019 P10.5 crx+ retina GTGCGGCTGG (3) 1.9 0.0019 P10.5 crx+ retina TAATAAATAT (5) 1.9 0.0019 Adult retinal CAGACAAAGC (7) 5.6 0.0056 Adult retinal TTTACACAGT (3) 3.7 0.0037 Adult retinal GTGCGGCTGG (3) 1.9 0.0019 ONL TTTACACAGT (3) 3.8 0.0038 ONL CAAAAAAATA (5) 1.9 0.0019 ONL CAGACAAAGC (7) 1.9 0.0019 ONL CCTATGTTCA (2) 1.9 0.0019 ONL CTGGAAGGGT (2) 1.9 0.0019 ONL TTTCTGGTGT (5) 1.9 0.0019