Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.212703	B230377B03Rik	RIKEN cDNA B230377B03 gene	11		320409
Mm.212703	Mdh1	malate dehydrogenase 1, NAD (soluble)	11	11 12.0 cM	17449
Gene Ontology	malate dehydrogenase activity | malic enzyme activity | oxidoreductase activity | tricarboxylic acid cycle
Human Homolog	MDH1[malate dehydrogenase 1, NAD (soluble)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 139 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGTTAGTGC (3) 52.2 0.0522 P8 Cb GC AAAGCAAAGC (5) 4.9 0.0049 P8 Cb GC TGAAAATCTT (4) 4.9 0.0049 P8 Cb GC GAGAAGAAGG (11) 3.3 0.0033 P8 Cb GC ATGGACTTTA (13) 1.6 0.0016 P8 Cb GC CATCATCTTT (2) 1.6 0.0016 P8 Cb GC GGAAAGGAAG (6) 1.6 0.0016 P8 Cb GC GTGTATCTCT (4) 1.6 0.0016 P8 Cb GC TTAAAAGGAA (8) 1.6 0.0016 Cb medulloblastoma TTGTTAGTGC (3) 108.7 0.1087 Cb medulloblastoma AAAGCAAAGC (5) 11.6 0.0116 Cb medulloblastoma CATCATCTTT (2) 6.9 0.0069 Cb medulloblastoma TGAAAATCTT (4) 6.9 0.0069 Cb medulloblastoma GAGAAGAAGG (11) 4.6 0.0046 Cb medulloblastoma GGAAAGGAAG (6) 4.6 0.0046 Cb medulloblastoma GGTTTAAAAA (6) 4.6 0.0046 Cb medulloblastoma ATAGACTTTC (2) 2.3 0.0023 Cb medulloblastoma CCAAGGGGGA (2) 2.3 0.0023 Cb medulloblastoma GAGAGGAAAG (3) 2.3 0.0023 P8 GC+1d culture TTGTTAGTGC (3) 43.4 0.0434 P8 GC+1d culture AAAGCAAAGC (5) 3.4 0.0034 P8 GC+1d culture ATGGACTTTA (13) 2.3 0.0023 P8 GC+1d culture GAACTGCAAA (10) 1.1 0.0011 P8 GC+1d culture GTGTATCTCT (4) 1.1 0.0011 P8 GC+1d culture TGAAAATCTT (4) 1.1 0.0011 P8 GC+1d culture TTAAAAGGAA (8) 1.1 0.0011 P8 GC+SHH+1d culture TTGTTAGTGC (3) 46.8 0.0468 P8 GC+SHH+1d culture AAAGCAAAGC (5) 5.9 0.0059 P8 GC+SHH+1d culture TTTTCATTGT (6) 2.3 0.0023 P8 GC+SHH+1d culture ATGGACTTTA (13) 1.2 0.0012 P8 GC+SHH+1d culture CTTGCAGCCT (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGAAGAAGG (11) 1.2 0.0012 P8 GC+SHH+1d culture GTGTATCTCT (4) 1.2 0.0012 P8 GC+SHH+1d culture TGAAAATCTT (4) 1.2 0.0012 3T3 fibroblasts TTGTTAGTGC (3) 7 0.007 E15 cortex TTGTTAGTGC (3) 14.8 0.0148 E15 cortex CCAAGGTGAA (6) 4.9 0.0049 E15 cortex CTTGCAGCCT (2) 4.9 0.0049 E15 cortex GAGAAGGAAG (8) 4.9 0.0049 P1 cortex TTGTTAGTGC (3) 22.7 0.0227 P1 cortex AAAGCAAAGC (5) 4.5 0.0045 P1 cortex TGGCTGTCCT (3) 4.5 0.0045 P1 cortex TTAAAAGGAA (8) 4.5 0.0045 Hypothalamus TTGTTAGTGC (3) 244.5 0.2445 Hypothalamus AAAGCAAAGC (5) 38 0.038 Hypothalamus ATAGACTTTC (2) 10.9 0.0109 Hypothalamus TGAAAATCTT (4) 9.1 0.0091 Hypothalamus TGGCTGTCCT (3) 3.6 0.0036 Hypothalamus TTTTCATTGT (6) 1.8 0.0018 E12.5 retina TTGTTAGTGC (3) 50.7 0.0507 E12.5 retina TGAAAATCTT (4) 7.5 0.0075 E12.5 retina AAAGCAAAGC (5) 3.8 0.0038 E12.5 retina TTTTCATTGT (6) 3.8 0.0038 E12.5 retina ATAGACTTTC (2) 1.9 0.0019 E12.5 retina GAGAAGGAAG (8) 1.9 0.0019 E12.5 retina GGTTTAAAAA (6) 1.9 0.0019 E14.5 retina TTGTTAGTGC (3) 52.8 0.0528 E14.5 retina TGAAAATCTT (4) 23.7 0.0237 E14.5 retina AAAGCAAAGC (5) 16.4 0.0164 E14.5 retina TTTTCATTGT (6) 3.6 0.0036 E14.5 retina CATCATCTTT (2) 1.8 0.0018 E14.5 retina GGAAAGGAAG (6) 1.8 0.0018 E14.5 retina TTAAAAGGAA (8) 1.8 0.0018 E16.5 retina TTGTTAGTGC (3) 70.6 0.0706 E16.5 retina AAAGCAAAGC (5) 10.9 0.0109 E16.5 retina TGAAAATCTT (4) 10.9 0.0109 E16.5 retina TTTTCATTGT (6) 5.4 0.0054 E16.5 retina TTAAAAGGAA (8) 1.8 0.0018 E18.5 retina TTGTTAGTGC (3) 69.1 0.0691 E18.5 retina TGAAAATCTT (4) 20 0.02 E18.5 retina AAAGCAAAGC (5) 12.7 0.0127 E18.5 retina TGAGACTGGA (3) 1.8 0.0018 E18.5 retina TGGCTGTCCT (3) 1.8 0.0018 P0.5 retina TTGTTAGTGC (3) 37.3 0.0373 P0.5 retina TGAAAATCTT (4) 9.8 0.0098 P0.5 retina AAAGCAAAGC (5) 7.9 0.0079 P0.5 retina GAGAGGAAAG (3) 3.9 0.0039 P0.5 retina TGGCTGTCCT (3) 3.9 0.0039 P0.5 retina GGTTTAAAAA (6) 2 0.002 P2.5 retina TTGTTAGTGC (3) 42.2 0.0422 P2.5 retina TGAAAATCTT (4) 29.9 0.0299 P2.5 retina AAAGCAAAGC (5) 10.6 0.0106 P2.5 retina CATCATCTTT (2) 3.5 0.0035 P2.5 retina ATGGACTTTA (13) 1.8 0.0018 P2.5 retina GGAAAGGAAG (6) 1.8 0.0018 P2.5 retina GGTTTAAAAA (6) 1.8 0.0018 P2.5 retina TTTTCATTGT (6) 1.8 0.0018 P4.5 retina TTGTTAGTGC (3) 83.2 0.0832 P4.5 retina TGAAAATCTT (4) 43.6 0.0436 P4.5 retina AAAGCAAAGC (5) 13.9 0.0139 P4.5 retina CCAAGGGGGA (2) 4 0.004 P4.5 retina TGAGACTGGA (3) 4 0.004 P4.5 retina ATAGACTTTC (2) 2 0.002 P4.5 retina CATCATCTTT (2) 2 0.002 P4.5 retina CCAAGGTGAA (6) 2 0.002 P4.5 retina CTTGCAGCCT (2) 2 0.002 P4.5 retina GGAAAGGAAG (6) 2 0.002 P4.5 retina TGGCTGTCCT (3) 2 0.002 P6.5 retina TTGTTAGTGC (3) 63.4 0.0634 P6.5 retina AAAGCAAAGC (5) 25 0.025 P6.5 retina TGAAAATCTT (4) 25 0.025 P6.5 retina CATCATCTTT (2) 3.3 0.0033 P6.5 retina ATGGACTTTA (13) 1.7 0.0017 P6.5 retina GAACTGCAAA (10) 1.7 0.0017 P6.5 retina GGAAAGGAAG (6) 1.7 0.0017 P6.5 retina TTTTCATTGT (6) 1.7 0.0017 P10.5 crx- retina TTGTTAGTGC (3) 76.2 0.0762 P10.5 crx- retina AAAGCAAAGC (5) 22.3 0.0223 P10.5 crx- retina TGAAAATCTT (4) 18.6 0.0186 P10.5 crx- retina ATGGGTGTCC (6) 3.7 0.0037 P10.5 crx- retina CCAAGGGGGA (2) 1.9 0.0019 P10.5 crx- retina CCAAGGTGAA (6) 1.9 0.0019 P10.5 crx- retina CTTGCAGCCT (2) 1.9 0.0019 P10.5 crx- retina TTTTCATTGT (6) 1.9 0.0019 P10.5 crx+ retina TTGTTAGTGC (3) 82.7 0.0827 P10.5 crx+ retina AAAGCAAAGC (5) 42.3 0.0423 P10.5 crx+ retina TGAAAATCTT (4) 26.9 0.0269 P10.5 crx+ retina TGGCTGTCCT (3) 3.8 0.0038 P10.5 crx+ retina ATGGGTGTCC (6) 1.9 0.0019 P10.5 crx+ retina CATCATCTTT (2) 1.9 0.0019 P10.5 crx+ retina CTTGCAGCCT (2) 1.9 0.0019 P10.5 crx+ retina TTAAAAGGAA (8) 1.9 0.0019 Adult retinal TTGTTAGTGC (3) 61.1 0.0611 Adult retinal TGAAAATCTT (4) 14.8 0.0148 Adult retinal AAAGCAAAGC (5) 5.6 0.0056 Adult retinal CATCATCTTT (2) 3.7 0.0037 Adult retinal TTTTCATTGT (6) 3.7 0.0037 Adult retinal ATAGACTTTC (2) 1.9 0.0019 Adult retinal GAACTGCAAA (10) 1.9 0.0019 Adult retinal TGGCTGTCCT (3) 1.9 0.0019 ONL TTGTTAGTGC (3) 57.5 0.0575 ONL TGAAAATCTT (4) 11.5 0.0115 ONL AAAGCAAAGC (5) 7.7 0.0077 ONL ATAGACTTTC (2) 1.9 0.0019 ONL CATCATCTTT (2) 1.9 0.0019 ONL CTTGCAGCCT (2) 1.9 0.0019 ONL GAGAAGAAGG (11) 1.9 0.0019 ONL GAGAAGGAAG (8) 1.9 0.0019 ONL TTAAAAGGAA (8) 1.9 0.0019